species,phenotype_id,name,doi,study,scoring,source,type,growth_conditions,integration_date,number_replicates,to_term,to_name,to_definition,to_comment,to_source_acronym,to_source_name,to_source_url,eo_term,eo_name,eo_definition,eo_comment,eo_source_acronym,eo_source_name,eo_source_url,uo_term,uo_name,uo_definition,uo_comment,uo_source_acronym,uo_source_name,uo_source_url,num_values
Arabidopsis thaliana (NCBI: 3702),116,DTFplantingSummerLocSweden2009,10.21958/phenotype:116,Flowering time in simulated seasons,,,,,2016-07-04T11:16:56.161000Z,0,TO:0000344,days to flowering trait,"""A flowering time trait (TO:0002616)which is the number of days required for an individual flower (PO:0009046), a whole plant (PO:0000003) or a plant population to reach flowering stage (PO:0007616) from a predetermined time point (e.g. the date of seed sowing, seedling transplant, or seedling emergence)."" [GR:pj, TO:cooperl]","Often determinded by either pollen shedding, exsertion of the anthers or simply opening of the flower.",PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,,,,,,,,UO:0000186,dimensionless unit,"""A unit which is a standard measure of physical quantity consisting of only a numerical number without any units."" [Wikipedia:Wikipedia]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),87,LN16,10.21958/phenotype:87,"Atwell et. al, Nature 2010","Plants were checked bi-weekly for presence of first buds, and the average leaf number at flowering time of 4 plants of the same accession were collected",,,,2016-06-27T14:14:01.719000Z,0,TO:0000241,leaf number,"""A shoot system morphology trait (TO:0000077) which is the number of leaves (PO:0025034) in a shoot system (PO:0009006) of a plant."" [GR:pj, TO:cooperl]",,PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,EO:0007269,growth chamber study,"""The treatment involving study type in which plants were grown in growth chambers."" [GR:pj]",,PECO,Plant Environmental Conditions,https://bioportal.bioontology.org/ontologies/PECO,UO:0000189,count unit,"""A dimensionless unit which denotes a simple count of things."" [MGED:MGED]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),652,Branched0,10.21958/phenotype:652,Salt induced changes in Root System Architecture,EZ-Rhizo - length of the Branched Zone at 0 mM NaCl,,0,"1/2 MS medium, 1% agar, pH 5.8 with KOH, plants transferred to media containing 0 mM NaCl 4 days after germination. Root architecture scored 4 days after transfer to treatment media.",2019-05-06T12:47:15.839000Z,0,TO:0000043,root morphology trait,"""A plant axis morphology trait (TO:0000738) which is a quality of a root (PO:0025025)."" [GR:pj, PO:0025025, POC:cooperl]",,PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,EO:0001024,vertical agar growth medium,"""An agar growth medium (EO:0001023) involving use of solid growth media in a vertical orientation."" [PO:cooperl]",,PECO,Plant Environmental Conditions,https://bioportal.bioontology.org/ontologies/PECO,UO:0000001,length unit,"""A unit which is a standard measure of the distance between two points."" [Wikipedia:Wikipedia]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),765,root length day005 minusZn,10.21958/phenotype:765,Root growth under Zn deficiency Bouain et al. 2018,Primary root growth has been measured with the Brat software.,,0,"Arabidopsis plants have been grown on plates containing zinc deficiency (-Zn) medium in presence of 1% (wt/vol) sucrose and 0.8% (wt/vol) agar, over 7 days starting three days after imbibition.",2019-07-28T11:31:29.575000Z,0,TO:0000227,root length,"""A root morphology trait (TO:0000043) which is the length of one or more roots (PO:0009005)."" [GR:jcl\nGR\:pj, TO:austin_meier\nTO\:cooperl]",refer to PATO:0000122- A 1-D extent quality which is equal to the distance between two points.,PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,EO:0007147,plant growth medium,"""An abiotic plant treatment (EO:0007191) involving the use of a solid or liquid substrate for growing plants or tissue-cultured plant samples."" [GR:pj, PO:cooperl]",,PECO,Plant Environmental Conditions,https://bioportal.bioontology.org/ontologies/PECO,UO:0000241,micron pixel,"""A spatial resolution unit which is equal to a pixel size of one micrometer."" [Wikipedia:Wikipedia]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),273,P31,10.21958/phenotype:273,Ion Concentration,Phosphorus concentrations in leaves,,,,2017-03-21T12:58:51.181000Z,0,TO:0006045,phosphorus concentration,"""A phosphorus content (TO:0001024) which is the concentration of phosphorus (CHEBI:26082) in some plant structure (PO:0009011)"" [GR:Karthik]",,PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,EO:0007269,growth chamber study,"""The treatment involving study type in which plants were grown in growth chambers."" [GR:pj]",,PECO,Plant Environmental Conditions,https://bioportal.bioontology.org/ontologies/PECO,UO:0000051,concentration unit,"""A unit which represents a standard measurement of how much of a given substance there is mixed with another substance."" [UOC:GVG]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,6
Arabidopsis thaliana (NCBI: 3702),51,Ca43,10.21958/phenotype:51,"Atwell et. al, Nature 2010","Calcium concentrations in leaves, grown in soil. Elemental analysis was performed with an ICP-MS (PerkinElmer). Sample normalized to calculated weights as described in Baxter et al., 2008",,,,2016-06-27T14:14:01.533000Z,0,TO:0006047,calcium concentration,"""A mineral and ion content related trait (TO:0000465) which is the concentration of calcium (CHEBI:22985) in some plant structure (PO:0009011)."" [GR:Karthik]",,PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,EO:0007269,growth chamber study,"""The treatment involving study type in which plants were grown in growth chambers."" [GR:pj]",,PECO,Plant Environmental Conditions,https://bioportal.bioontology.org/ontologies/PECO,UO:0000051,concentration unit,"""A unit which represents a standard measurement of how much of a given substance there is mixed with another substance."" [UOC:GVG]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),272,Mg25,10.21958/phenotype:272,Ion Concentration,Magnesium concentrations in leaves,,,,2017-03-21T12:58:51.180000Z,0,TO:0006044,magnesium concentration,"""A mineral and ion content related trait (TO:0000465) which is the concentration of magnesium (CHEBI:25108) in some plant structure (PO:0009011)."" [GR:Karthik]",,PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,EO:0007269,growth chamber study,"""The treatment involving study type in which plants were grown in growth chambers."" [GR:pj]",,PECO,Plant Environmental Conditions,https://bioportal.bioontology.org/ontologies/PECO,UO:0000051,concentration unit,"""A unit which represents a standard measurement of how much of a given substance there is mixed with another substance."" [UOC:GVG]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,6
Arabidopsis thaliana (NCBI: 3702),732,MS-mean Total length day005,10.21958/phenotype:732,Root growth rates under nutrient deficiency,individual root growth was measured as the mean of 3 Arabidopsis seedlings.,,0,"Seedlings were grown on MS plates at 22°C in a growth chamber with long day conditions (16h light, 8h dark)",2019-07-16T09:11:48.625000Z,0,TO:0000227,root length,"""A root morphology trait (TO:0000043) which is the length of one or more roots (PO:0009005)."" [GR:jcl\nGR\:pj, TO:austin_meier\nTO\:cooperl]",refer to PATO:0000122- A 1-D extent quality which is equal to the distance between two points.,PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,EO:0007147,plant growth medium,"""An abiotic plant treatment (EO:0007191) involving the use of a solid or liquid substrate for growing plants or tissue-cultured plant samples."" [GR:pj, PO:cooperl]",,PECO,Plant Environmental Conditions,https://bioportal.bioontology.org/ontologies/PECO,UO:0000241,micron pixel,"""A spatial resolution unit which is equal to a pixel size of one micrometer."" [Wikipedia:Wikipedia]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),70,As CFU2,10.21958/phenotype:70,"Atwell et. al, Nature 2010",,,,,2016-06-27T14:14:01.638000Z,0,TO:0000315,bacterial disease resistance,"""The resistance exhibited by a plant or a group of plants (population) in response to the disease caused by a bacterial pathogen infection as compared to the susceptible and/or the reference plants of the same species."" [GR:pj]",It represents the damage done by the diease and/or the pathogen to the plant. The damage is a direct measure of resistance to the particular bacterial strain causing the disease.,PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,EO:0007269,growth chamber study,"""The treatment involving study type in which plants were grown in growth chambers."" [GR:pj]",,PECO,Plant Environmental Conditions,https://bioportal.bioontology.org/ontologies/PECO,UO:0000210,colony forming unit,"""A dimensionless count unit which a measure of viable bacterial numbers."" [Wikipedia:Wikipedia]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),758,root length day005,10.21958/phenotype:758,Root growth under Zn deficiency Bouain et al. 2018,Primary root growth has been measured with the Brat software.,,0,"Arabidopsis plants have been grown on plates containing full growth medium in presence of 1% (wt/vol) sucrose and 0.8% (wt/vol) agar, over 7 days starting three days after imbibition.",2019-07-28T11:31:29.568000Z,0,TO:0000227,root length,"""A root morphology trait (TO:0000043) which is the length of one or more roots (PO:0009005)."" [GR:jcl\nGR\:pj, TO:austin_meier\nTO\:cooperl]",refer to PATO:0000122- A 1-D extent quality which is equal to the distance between two points.,PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,EO:0007147,plant growth medium,"""An abiotic plant treatment (EO:0007191) involving the use of a solid or liquid substrate for growing plants or tissue-cultured plant samples."" [GR:pj, PO:cooperl]",,PECO,Plant Environmental Conditions,https://bioportal.bioontology.org/ontologies/PECO,UO:0000241,micron pixel,"""A spatial resolution unit which is equal to a pixel size of one micrometer."" [Wikipedia:Wikipedia]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),278,Fe57,10.21958/phenotype:278,Ion Concentration,Iron concentrations in leaves,,,,2017-03-21T12:58:51.187000Z,0,TO:0006049,iron concentration,"""An iron content (TO:0020089) which is the concentration of iron (CHEBI:24873) in some plant structure (PO:0009011)"" [GR:Karthik]",,PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,EO:0007269,growth chamber study,"""The treatment involving study type in which plants were grown in growth chambers."" [GR:pj]",,PECO,Plant Environmental Conditions,https://bioportal.bioontology.org/ontologies/PECO,UO:0000051,concentration unit,"""A unit which represents a standard measurement of how much of a given substance there is mixed with another substance."" [UOC:GVG]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,6
Arabidopsis thaliana (NCBI: 3702),670,Apical75,10.21958/phenotype:670,Salt induced changes in Root System Architecture,EZ-Rhizo - length of the Apical Zone at 75 mM NaCl,,0,"1/2 MS medium, 1% agar, pH 5.8 with KOH, plants transferred to media containing 75 mM NaCl 4 days after germination. Root architecture scored 8 days after transfer to treatment media.",2019-05-06T12:47:15.846000Z,0,TO:0000043,root morphology trait,"""A plant axis morphology trait (TO:0000738) which is a quality of a root (PO:0025025)."" [GR:pj, PO:0025025, POC:cooperl]",,PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,EO:0001024,vertical agar growth medium,"""An agar growth medium (EO:0001023) involving use of solid growth media in a vertical orientation."" [PO:cooperl]",,PECO,Plant Environmental Conditions,https://bioportal.bioontology.org/ontologies/PECO,UO:0000001,length unit,"""A unit which is a standard measure of the distance between two points."" [Wikipedia:Wikipedia]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),734,F-mean Total length day004,10.21958/phenotype:734,Root growth rates under nutrient deficiency,individual root growth was measured as the mean of 3 Arabidopsis seedlings.,,0,"Seedlings were grown on MS plates at 22°C in a growth chamber with long day conditions (16h light, 8h dark)",2019-07-16T09:11:48.627000Z,0,TO:0000227,root length,"""A root morphology trait (TO:0000043) which is the length of one or more roots (PO:0009005)."" [GR:jcl\nGR\:pj, TO:austin_meier\nTO\:cooperl]",refer to PATO:0000122- A 1-D extent quality which is equal to the distance between two points.,PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,EO:0007147,plant growth medium,"""An abiotic plant treatment (EO:0007191) involving the use of a solid or liquid substrate for growing plants or tissue-cultured plant samples."" [GR:pj, PO:cooperl]",,PECO,Plant Environmental Conditions,https://bioportal.bioontology.org/ontologies/PECO,UO:0000241,micron pixel,"""A spatial resolution unit which is equal to a pixel size of one micrometer."" [Wikipedia:Wikipedia]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),92,Leaf serr 22,10.21958/phenotype:92,"Atwell et. al, Nature 2010",Average severity of serration across 4 plants was scored between 0 (entire lamina) and 1.5 (jagged serration) after 5 weeks of growth,,,,2016-06-27T14:14:01.743000Z,0,TO:0006063,leaf margin serrated,"""A leaf margin morphology trait (TO:0002635) which is a notched or grooved leaf margin (PO:0020128)."" [GR:curators, PO:0020128, POC:cooperl]",Refer to serrated (PATO:0001206): A shape quality inhering in a bearer by virtue of having sharp straight-edged teeth pointing to the apex.,PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,EO:0007269,growth chamber study,"""The treatment involving study type in which plants were grown in growth chambers."" [GR:pj]",,PECO,Plant Environmental Conditions,https://bioportal.bioontology.org/ontologies/PECO,UO:0000186,dimensionless unit,"""A unit which is a standard measure of physical quantity consisting of only a numerical number without any units."" [Wikipedia:Wikipedia]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),660,MRL75,10.21958/phenotype:660,Salt induced changes in Root System Architecture,EZ-Rhizo - Main Root Length at 75 mM NaCl,,0,"1/2 MS medium, 1% agar, pH 5.8 with KOH, plants transferred to media containing 75 mM NaCl 4 days after germination. Root architecture scored 8 days after transfer to treatment media.",2019-05-06T12:47:15.842000Z,0,TO:0000043,root morphology trait,"""A plant axis morphology trait (TO:0000738) which is a quality of a root (PO:0025025)."" [GR:pj, PO:0025025, POC:cooperl]",,PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,EO:0001024,vertical agar growth medium,"""An agar growth medium (EO:0001023) involving use of solid growth media in a vertical orientation."" [PO:cooperl]",,PECO,Plant Environmental Conditions,https://bioportal.bioontology.org/ontologies/PECO,UO:0000001,length unit,"""A unit which is a standard measure of the distance between two points."" [Wikipedia:Wikipedia]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),1397,Leaf Mn Mine (μg/g),10.21958/phenotype:1397,Pb Mine soil,"Mn concentrations in leaves, cultivated in Pb-enriched mine soil. Elemental analysis was performed with an ICP-OES (PerkinElmer).",,0,"Seeds of the Arabidopsis thaliana HapMap cohort (360 natural populations) were surface sterilized using 3:10 bleach solution in constant agitation for 10 minutes and rinsed with sterile water six times. Seeds were stratified for 4 days at 4 C in 0.1% agar solution to synchronize germination, then 5 seeds per accession were sown in two soil types with contrasted Pb concentrations into pot trays. The control soil was a mix of commercial potting mix soil with perlite (2:1); the mine soil was a mix of soil from an ancient lead mine (Mina de Can Vergeli; 41°53'42.4""N 3°01'11.7""E), commercial potting mix soil and perlite (2:1:1). Trays were placed in a growth chamber with 150 mmol/m2s of light intensity, 12h light/12h dark photoperiod, and 25 ºC /20 ºC day/night temperature. Trays were bottom-watered twice weekly with deionized water. Fifty-day old plants were harvested to measure its nutrient mineral contents.",2021-07-02T08:52:48.137848Z,0,TO:0006048,manganese concentration,"""A manganese content (TO:0020091) which is the concentration of manganese (CHEBI:25154) in some plant structure (PO:0009011)"" [GR:Karthik]",,PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,EO:0007248,green house study,"""The treatment where the plants were grown under green house conditions. This may involve supplemental treatments in addition to any standard conditions."" [GR:pj]",,PECO,Plant Environmental Conditions,https://bioportal.bioontology.org/ontologies/PECO,UO:0000023,microgram,"""A mass unit which is equal to one millionth of a gram or 10^[-6] g."" [UOC:GVG]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),663,MRVA75,10.21958/phenotype:663,Salt induced changes in Root System Architecture,EZ-Rhizo - Main Root Vector Angle at 75 mM NaCl,,0,"1/2 MS medium, 1% agar, pH 5.8 with KOH, plants transferred to media containing 75 mM NaCl 4 days after germination. Root architecture scored 8 days after transfer to treatment media.",2019-05-06T12:47:15.843000Z,0,TO:0000043,root morphology trait,"""A plant axis morphology trait (TO:0000738) which is a quality of a root (PO:0025025)."" [GR:pj, PO:0025025, POC:cooperl]",,PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,EO:0001024,vertical agar growth medium,"""An agar growth medium (EO:0001023) involving use of solid growth media in a vertical orientation."" [PO:cooperl]",,PECO,Plant Environmental Conditions,https://bioportal.bioontology.org/ontologies/PECO,UO:0000185,degree,"""A plane angle unit which is equal to 1/360 of a full rotation or 1.7453310^[-2] rad."" [Wikipedia:Wikipedia]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),1307,NAT (Natural seed Aging Treatment),10.21958/phenotype:1307,"Seed longevity (Renard et. al., 2020)",The germination ratio was scored after 7 days and corrected with the control germination ratio.,,0,"Seeds were aged for 18 months of dry-storage at ambient laboratory conditions (20-25 ºC, 40-60% RH). Chlorine gas sterilization, 7 days of seed vernalization and MS media sowing was used for 269 ecotypes to ensure same treatment and growing conditions.",2020-08-26T11:32:38.369564Z,0,TO:0000435,seed longevity,,,PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,EO:0007175,temperature environment,"""A physical plant treatment (EO:0007316) involving an exposure to varying degree of temperature, which may depend on regional environment."" [GR:pj]",,PECO,Plant Environmental Conditions,https://bioportal.bioontology.org/ontologies/PECO,UO:0000190,ratio,"""A dimensionless unit which denotes an amount or magnitude of one quantity relative to another."" [Wikipedia:Wikipedia]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),271,Na23,10.21958/phenotype:271,Ion Concentration,odium concentrations in leaves,,,,2017-03-21T12:58:51.179000Z,0,TO:0000526,sodium concentration,"""The total sodium ion concentration measured in a given volume of a plant or a plant part or plant extract."" [GR:pj]",,PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,EO:0007269,growth chamber study,"""The treatment involving study type in which plants were grown in growth chambers."" [GR:pj]",,PECO,Plant Environmental Conditions,https://bioportal.bioontology.org/ontologies/PECO,UO:0000051,concentration unit,"""A unit which represents a standard measurement of how much of a given substance there is mixed with another substance."" [UOC:GVG]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,6
Arabidopsis thaliana (NCBI: 3702),22,Co59,10.21958/phenotype:22,"Atwell et. al, Nature 2010","Cobalt concentrations in leaves, grown in soil. Elemental analysis was performed with an ICP-MS (PerkinElmer). Sample normalized to calculated weights as described in Baxter et al., 2008",,,,2016-06-27T14:14:01.077000Z,0,TO:0006050,cobalt concentration,"""A mineral and ion content related trait (TO:0000465) which is the concentration of cobalt (CHEBI:33888) in some plant structure (PO:0009011)."" [GR:Karthik]",,PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,EO:0007269,growth chamber study,"""The treatment involving study type in which plants were grown in growth chambers."" [GR:pj]",,PECO,Plant Environmental Conditions,https://bioportal.bioontology.org/ontologies/PECO,UO:0000051,concentration unit,"""A unit which represents a standard measurement of how much of a given substance there is mixed with another substance."" [UOC:GVG]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),135,YieldLocSweden2009,10.21958/phenotype:135,Flowering time in simulated seasons,Yield was recorded as dry seed weight in grams in Experiment 2 with two replicates under each condition,,,,2016-07-04T11:16:56.398000Z,0,TO:0000181,seed weight,"""A seed morphology trait (TO:0000184) which is the weight of a seed (PO:0009010)."" [GR:pj, ICIS:1058, PO:0009010, TO:moorel]",Seed weight is a component of seed yield (TO:0000905) and seed quality (TO:0000162). Refer to weight (PATO:0000128): A physical quality inhering in a bearer that has mass near a gravitational body.,PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,,,,,,,,UO:0000186,dimensionless unit,"""A unit which is a standard measure of physical quantity consisting of only a numerical number without any units."" [Wikipedia:Wikipedia]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),764,root length day004 minusZn,10.21958/phenotype:764,Root growth under Zn deficiency Bouain et al. 2018,Primary root growth has been measured with the Brat software.,,0,"Arabidopsis plants have been grown on plates containing zinc deficiency (-Zn) medium in presence of 1% (wt/vol) sucrose and 0.8% (wt/vol) agar, over 7 days starting three days after imbibition.",2019-07-28T11:31:29.574000Z,0,TO:0000227,root length,"""A root morphology trait (TO:0000043) which is the length of one or more roots (PO:0009005)."" [GR:jcl\nGR\:pj, TO:austin_meier\nTO\:cooperl]",refer to PATO:0000122- A 1-D extent quality which is equal to the distance between two points.,PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,EO:0007147,plant growth medium,"""An abiotic plant treatment (EO:0007191) involving the use of a solid or liquid substrate for growing plants or tissue-cultured plant samples."" [GR:pj, PO:cooperl]",,PECO,Plant Environmental Conditions,https://bioportal.bioontology.org/ontologies/PECO,UO:0000241,micron pixel,"""A spatial resolution unit which is equal to a pixel size of one micrometer."" [Wikipedia:Wikipedia]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),641,MRVL0,10.21958/phenotype:641,Salt induced changes in Root System Architecture,EZ-Rhizo - Main Root Vector Length (straight line from beginning to end of the main root) at 0 mM NaCl,,0,"1/2 MS medium, 1% agar, pH 5.8 with KOH, plants transferred to media containing 0 mM NaCl 4 days after germination. Root architecture scored 4 days after transfer to treatment media.",2019-05-06T12:47:15.834000Z,0,TO:0000043,root morphology trait,"""A plant axis morphology trait (TO:0000738) which is a quality of a root (PO:0025025)."" [GR:pj, PO:0025025, POC:cooperl]",,PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,EO:0001024,vertical agar growth medium,"""An agar growth medium (EO:0001023) involving use of solid growth media in a vertical orientation."" [PO:cooperl]",,PECO,Plant Environmental Conditions,https://bioportal.bioontology.org/ontologies/PECO,UO:0000001,length unit,"""A unit which is a standard measure of the distance between two points."" [Wikipedia:Wikipedia]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),665,noLRpMR75,10.21958/phenotype:665,Salt induced changes in Root System Architecture,EZ-Rhizo - number of lateral roots per main root,,0,"1/2 MS medium, 1% agar, pH 5.8 with KOH, plants transferred to media containing 75 mM NaCl 4 days after germination. Root architecture scored 8 days after transfer to treatment media.",2019-05-06T12:47:15.844000Z,0,TO:0000043,root morphology trait,"""A plant axis morphology trait (TO:0000738) which is a quality of a root (PO:0025025)."" [GR:pj, PO:0025025, POC:cooperl]",,PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,EO:0001024,vertical agar growth medium,"""An agar growth medium (EO:0001023) involving use of solid growth media in a vertical orientation."" [PO:cooperl]",,PECO,Plant Environmental Conditions,https://bioportal.bioontology.org/ontologies/PECO,UO:0000189,count unit,"""A dimensionless unit which denotes a simple count of things."" [MGED:MGED]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),759,root length day006,10.21958/phenotype:759,Root growth under Zn deficiency Bouain et al. 2018,Primary root growth has been measured with the Brat software.,,0,"Arabidopsis plants have been grown on plates containing full growth medium in presence of 1% (wt/vol) sucrose and 0.8% (wt/vol) agar, over 7 days starting three days after imbibition.",2019-07-28T11:31:29.568000Z,0,TO:0000227,root length,"""A root morphology trait (TO:0000043) which is the length of one or more roots (PO:0009005)."" [GR:jcl\nGR\:pj, TO:austin_meier\nTO\:cooperl]",refer to PATO:0000122- A 1-D extent quality which is equal to the distance between two points.,PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,EO:0007147,plant growth medium,"""An abiotic plant treatment (EO:0007191) involving the use of a solid or liquid substrate for growing plants or tissue-cultured plant samples."" [GR:pj, PO:cooperl]",,PECO,Plant Environmental Conditions,https://bioportal.bioontology.org/ontologies/PECO,UO:0000241,micron pixel,"""A spatial resolution unit which is equal to a pixel size of one micrometer."" [Wikipedia:Wikipedia]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),768,Gravitropic setpoint angle (GSA),10.21958/phenotype:768,Gravitropic setpoint angle (GSA),"Plates with 14-day-old seedlings were scanned and the initial gravitropic set-point angle (iGSA) of individual LRs was measured with reference to the gravity vector7 using Image J software. All available LR from each seedling were measured. Individual GSA values were then sorted into eight categories: 0–30°, 31–50°, 51–70°, 71–90°, 91–110°, 111–180°.",,0,"Seeds were surfaced sterilized and stratified at 4°C for 2 days in the dark. Seedligns were grown vertically on half Murashige and Skoog medium for 14 days. Plates were scanned, GSA was measured and normalized to the GSA of Col-0.",2019-08-27T12:25:10.762000Z,0,TO:0002693,gravity response trait,"""An assay to determine the variation in the gravitropism under the influence of gravity or zero gravity."" [GR:pj]",,PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,EO:0007266,in vitro growth medium,"""A growth medium environment (EO:0007147) for in vitro culture, involving use of a solid or liquid substrate and which may include nutrients and other amendments."" [GR:pj, PO:cooperl]",,PECO,Plant Environmental Conditions,https://bioportal.bioontology.org/ontologies/PECO,UO:0000121,angle unit,"""A unit which is a standard measure of the figure or space formed by the junction of two lines or planes."" [Wikipedia:Wikipedia]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),282,Zn66,10.21958/phenotype:282,Ion Concentration,Zinc concentrations in leaves,,,,2017-03-21T12:58:51.191000Z,0,TO:0006053,zinc concentration,"""A zinc content (TO:0020090) which is the concentration of zinc (CHEBI:27364) in some plant structure (PO:0009011)"" [GR:Karthik]",,PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,EO:0007269,growth chamber study,"""The treatment involving study type in which plants were grown in growth chambers."" [GR:pj]",,PECO,Plant Environmental Conditions,https://bioportal.bioontology.org/ontologies/PECO,UO:0000051,concentration unit,"""A unit which represents a standard measurement of how much of a given substance there is mixed with another substance."" [UOC:GVG]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,6
Arabidopsis thaliana (NCBI: 3702),733,F-mean Total length day003,10.21958/phenotype:733,Root growth rates under nutrient deficiency,individual root growth was measured as the mean of 3 Arabidopsis seedlings.,,0,"Seedlings were grown on MS plates at 22°C in a growth chamber with long day conditions (16h light, 8h dark)",2019-07-16T09:11:48.626000Z,0,TO:0000227,root length,"""A root morphology trait (TO:0000043) which is the length of one or more roots (PO:0009005)."" [GR:jcl\nGR\:pj, TO:austin_meier\nTO\:cooperl]",refer to PATO:0000122- A 1-D extent quality which is equal to the distance between two points.,PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,EO:0007147,plant growth medium,"""An abiotic plant treatment (EO:0007191) involving the use of a solid or liquid substrate for growing plants or tissue-cultured plant samples."" [GR:pj, PO:cooperl]",,PECO,Plant Environmental Conditions,https://bioportal.bioontology.org/ontologies/PECO,UO:0000241,micron pixel,"""A spatial resolution unit which is equal to a pixel size of one micrometer."" [Wikipedia:Wikipedia]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),269,Li7,10.21958/phenotype:269,Ion Concentration,Lithium concentrations in leaves,,,,2017-03-21T12:58:51.176000Z,0,TO:0006042,lithium concentration,"""A mineral and ion content related trait (TO:0000465) which is the concentration of lithium (CHEBI:33298) in some plant structure (PO:0009011)."" [GR:Karthik]",May be assayed for per gram fresh weight.,PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,EO:0007269,growth chamber study,"""The treatment involving study type in which plants were grown in growth chambers."" [GR:pj]",,PECO,Plant Environmental Conditions,https://bioportal.bioontology.org/ontologies/PECO,UO:0000051,concentration unit,"""A unit which represents a standard measurement of how much of a given substance there is mixed with another substance."" [UOC:GVG]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,6
Arabidopsis thaliana (NCBI: 3702),73,Mo98,10.21958/phenotype:73,"Atwell et. al, Nature 2010","Molybdenum concentrations in leaves, grown in soil. Elemental analysis was performed with an ICP-MS (PerkinElmer). Sample normalized to calculated weights as described in Baxter et al., 2008",,,,2016-06-27T14:14:01.652000Z,0,TO:0006056,molybdenum concentration,"""A mineral and ion content related trait (TO:0000465) which is the concentration of molybdenum (CHEBI:25370) in some plant structure (PO:0009011)."" [GR:Karthik]",,PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,EO:0007269,growth chamber study,"""The treatment involving study type in which plants were grown in growth chambers."" [GR:pj]",,PECO,Plant Environmental Conditions,https://bioportal.bioontology.org/ontologies/PECO,UO:0000051,concentration unit,"""A unit which represents a standard measurement of how much of a given substance there is mixed with another substance."" [UOC:GVG]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),103,As2,10.21958/phenotype:103,"Atwell et. al, Nature 2010",,,,,2016-06-27T14:14:01.807000Z,0,TO:0000315,bacterial disease resistance,"""The resistance exhibited by a plant or a group of plants (population) in response to the disease caused by a bacterial pathogen infection as compared to the susceptible and/or the reference plants of the same species."" [GR:pj]",It represents the damage done by the diease and/or the pathogen to the plant. The damage is a direct measure of resistance to the particular bacterial strain causing the disease.,PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,EO:0007269,growth chamber study,"""The treatment involving study type in which plants were grown in growth chambers."" [GR:pj]",,PECO,Plant Environmental Conditions,https://bioportal.bioontology.org/ontologies/PECO,UO:0000210,colony forming unit,"""A dimensionless count unit which a measure of viable bacterial numbers."" [Wikipedia:Wikipedia]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),280,Ni60,10.21958/phenotype:280,Ion Concentration,Nickel concentrations in leaves,,,,2017-03-21T12:58:51.189000Z,0,TO:0006051,nickel concenteration,"""The total Nickel ion concentration measured in a given volume of a plant or a plant part or plant extract."" [GR:Karthik]",,PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,EO:0007269,growth chamber study,"""The treatment involving study type in which plants were grown in growth chambers."" [GR:pj]",,PECO,Plant Environmental Conditions,https://bioportal.bioontology.org/ontologies/PECO,UO:0000051,concentration unit,"""A unit which represents a standard measurement of how much of a given substance there is mixed with another substance."" [UOC:GVG]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,6
Arabidopsis thaliana (NCBI: 3702),42,Bs CFU2,10.21958/phenotype:42,"Atwell et. al, Nature 2010",In planta bacterial growth (number of CFU / leaf area) of the P. viridiflava strain was individually measured as described in Goss and Bergelson 2006,,,,2016-06-27T14:14:01.491000Z,0,TO:0000315,bacterial disease resistance,"""The resistance exhibited by a plant or a group of plants (population) in response to the disease caused by a bacterial pathogen infection as compared to the susceptible and/or the reference plants of the same species."" [GR:pj]",It represents the damage done by the diease and/or the pathogen to the plant. The damage is a direct measure of resistance to the particular bacterial strain causing the disease.,PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,EO:0007269,growth chamber study,"""The treatment involving study type in which plants were grown in growth chambers."" [GR:pj]",,PECO,Plant Environmental Conditions,https://bioportal.bioontology.org/ontologies/PECO,UO:0000210,colony forming unit,"""A dimensionless count unit which a measure of viable bacterial numbers."" [Wikipedia:Wikipedia]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),121,DTF spain 2009 (2nd experiment),10.21958/phenotype:121,Flowering time in simulated seasons,,,,,2016-07-04T11:16:56.190000Z,0,TO:0000344,days to flowering trait,"""A flowering time trait (TO:0002616)which is the number of days required for an individual flower (PO:0009046), a whole plant (PO:0000003) or a plant population to reach flowering stage (PO:0007616) from a predetermined time point (e.g. the date of seed sowing, seedling transplant, or seedling emergence)."" [GR:pj, TO:cooperl]","Often determinded by either pollen shedding, exsertion of the anthers or simply opening of the flower.",PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,,,,,,,,UO:0000033,day,"""A time unit which is equal to 24 hours."" [Wikipedia:Wikipedia]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),117,DTFlocSweden2008,10.21958/phenotype:117,Flowering time in simulated seasons,,,,,2016-07-04T11:16:56.166000Z,0,TO:0000344,days to flowering trait,"""A flowering time trait (TO:0002616)which is the number of days required for an individual flower (PO:0009046), a whole plant (PO:0000003) or a plant population to reach flowering stage (PO:0007616) from a predetermined time point (e.g. the date of seed sowing, seedling transplant, or seedling emergence)."" [GR:pj, TO:cooperl]","Often determinded by either pollen shedding, exsertion of the anthers or simply opening of the flower.",PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,,,,,,,,UO:0000186,dimensionless unit,"""A unit which is a standard measure of physical quantity consisting of only a numerical number without any units."" [Wikipedia:Wikipedia]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),88,avrB,10.21958/phenotype:88,"Atwell et. al, Nature 2010","Following inoculation of two leaves per plant with 0.1 ml of 10 -8 cfu/ml bacteria in 10 mM MgSO4 buffer using a blunt-tipped syringe, leaf collapse was scored at 20 hrs and again at 24 hrs after inoculation. A positive score at either time point was deemed a hypersensitive response",,,,2016-06-27T14:14:01.724000Z,0,TO:0000315,bacterial disease resistance,"""The resistance exhibited by a plant or a group of plants (population) in response to the disease caused by a bacterial pathogen infection as compared to the susceptible and/or the reference plants of the same species."" [GR:pj]",It represents the damage done by the diease and/or the pathogen to the plant. The damage is a direct measure of resistance to the particular bacterial strain causing the disease.,PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,EO:0007269,growth chamber study,"""The treatment involving study type in which plants were grown in growth chambers."" [GR:pj]",,PECO,Plant Environmental Conditions,https://bioportal.bioontology.org/ontologies/PECO,UO:0000186,dimensionless unit,"""A unit which is a standard measure of physical quantity consisting of only a numerical number without any units."" [Wikipedia:Wikipedia]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),125,DTFmainEffect2009,10.21958/phenotype:125,Flowering time in simulated seasons,,,,,2016-07-04T11:16:56.353000Z,0,TO:0000344,days to flowering trait,"""A flowering time trait (TO:0002616)which is the number of days required for an individual flower (PO:0009046), a whole plant (PO:0000003) or a plant population to reach flowering stage (PO:0007616) from a predetermined time point (e.g. the date of seed sowing, seedling transplant, or seedling emergence)."" [GR:pj, TO:cooperl]","Often determinded by either pollen shedding, exsertion of the anthers or simply opening of the flower.",PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,,,,,,,,UO:0000186,dimensionless unit,"""A unit which is a standard measure of physical quantity consisting of only a numerical number without any units."" [Wikipedia:Wikipedia]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),113,DTF sweden 2008 (1st experiment),10.21958/phenotype:113,Flowering time in simulated seasons,FT was recorded daily as days to flower after germination in Experiments 1 and 2 with four replicates under each of the four conditions.,,,,2016-07-04T11:16:56.147000Z,0,TO:0000344,days to flowering trait,"""A flowering time trait (TO:0002616)which is the number of days required for an individual flower (PO:0009046), a whole plant (PO:0000003) or a plant population to reach flowering stage (PO:0007616) from a predetermined time point (e.g. the date of seed sowing, seedling transplant, or seedling emergence)."" [GR:pj, TO:cooperl]","Often determinded by either pollen shedding, exsertion of the anthers or simply opening of the flower.",PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,,,,,,,,UO:0000033,day,"""A time unit which is equal to 24 hours."" [Wikipedia:Wikipedia]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),40,Aphid number,10.21958/phenotype:40,"Atwell et. al, Nature 2010","On day 25 of growth,two alate females of the common peach aphid, Myzus persicae,were placed on each of four plants of each of the 96 genotypes. Nine days later, the number of offspring produced by these aphids on each plant was recorded.",,,,2016-06-27T14:14:01.481000Z,0,TO:0006067,aphid resistance,"""Resistance displayed by the plant to the aphid infestation."" [GR:pj]","Aphids are members of the insect order Homoptera, family Aphididae.",PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,EO:0007269,growth chamber study,"""The treatment involving study type in which plants were grown in growth chambers."" [GR:pj]",,PECO,Plant Environmental Conditions,https://bioportal.bioontology.org/ontologies/PECO,UO:0000189,count unit,"""A dimensionless unit which denotes a simple count of things."" [MGED:MGED]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),1308,AAT (Accelerated seed Aging Treatment),10.21958/phenotype:1308,"Seed longevity (Renard et. al., 2020)",The germination ratio was scored after 7 days and corrected with the control germination ratio.,,0,"Imbedded seeds were artificially aged at 39ºC for 48h. Chlorine gas sterilization, 7 days of seed vernalization (both prior to the aging treatment) and MS media sowing was used for 269 ecotypes to ensure same treatment and growing conditions.",2020-08-26T11:32:38.371241Z,0,TO:0000435,seed longevity,,,PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,EO:0007368,warm/hot water temperature regimen,"""The treatment involving an exposure to above optimal water temperature, which may depend on the study type or the regional environment."" [GR:pj]",,PECO,Plant Environmental Conditions,https://bioportal.bioontology.org/ontologies/PECO,UO:0000190,ratio,"""A dimensionless unit which denotes an amount or magnitude of one quantity relative to another."" [Wikipedia:Wikipedia]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),43,avrRpt2,10.21958/phenotype:43,"Atwell et. al, Nature 2010","Following inoculation of two leaves per plant with 0.1 ml of 10 -8 cfu/ml bacteria in 10 mM MgSO4 buffer using a blunt-tipped syringe, leaf collapse was scored at 20 hrs and again at 24 hrs after inoculation. A positive score at either time point was deemed a hypersensitive response",,,,2016-06-27T14:14:01.495000Z,0,TO:0000315,bacterial disease resistance,"""The resistance exhibited by a plant or a group of plants (population) in response to the disease caused by a bacterial pathogen infection as compared to the susceptible and/or the reference plants of the same species."" [GR:pj]",It represents the damage done by the diease and/or the pathogen to the plant. The damage is a direct measure of resistance to the particular bacterial strain causing the disease.,PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,EO:0007269,growth chamber study,"""The treatment involving study type in which plants were grown in growth chambers."" [GR:pj]",,PECO,Plant Environmental Conditions,https://bioportal.bioontology.org/ontologies/PECO,UO:0000186,dimensionless unit,"""A unit which is a standard measure of physical quantity consisting of only a numerical number without any units."" [Wikipedia:Wikipedia]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),717,RGR Fe,10.21958/phenotype:717,Root growth rates under nutrient deficiency,individual root growth was measured as the mean of 3 Arabidopsis seedlings between day 4 and 6 on MS plates. This phenotype is the root growth rates for seedlings growing under -Fe.,,0,"Seedlings were grown on MS plates at 22°C in a growth chamber with long day conditions (16h light, 8h dark)",2019-07-16T09:11:48.574000Z,0,TO:0000516,relative root length,"""The relative length of the root determined after a given treatment as compared to the one determined under normal conditions."" [GR:pj]",,PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,EO:0007147,plant growth medium,"""An abiotic plant treatment (EO:0007191) involving the use of a solid or liquid substrate for growing plants or tissue-cultured plant samples."" [GR:pj, PO:cooperl]",,PECO,Plant Environmental Conditions,https://bioportal.bioontology.org/ontologies/PECO,UO:0000280,rate unit,"""A unit which represents a standard measurement occurrence of a process per unit time."" [UOC:GVG]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),755,root length day002,10.21958/phenotype:755,Root growth under Zn deficiency Bouain et al. 2018,Primary root growth has been measured with the Brat software.,,0,"Arabidopsis plants have been grown on plates containing full growth medium in presence of 1% (wt/vol) sucrose and 0.8% (wt/vol) agar, over 7 days starting three days after imbibition.",2019-07-28T11:31:29.566000Z,0,TO:0000227,root length,"""A root morphology trait (TO:0000043) which is the length of one or more roots (PO:0009005)."" [GR:jcl\nGR\:pj, TO:austin_meier\nTO\:cooperl]",refer to PATO:0000122- A 1-D extent quality which is equal to the distance between two points.,PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,EO:0007147,plant growth medium,"""An abiotic plant treatment (EO:0007191) involving the use of a solid or liquid substrate for growing plants or tissue-cultured plant samples."" [GR:pj, PO:cooperl]",,PECO,Plant Environmental Conditions,https://bioportal.bioontology.org/ontologies/PECO,UO:0000241,micron pixel,"""A spatial resolution unit which is equal to a pixel size of one micrometer."" [Wikipedia:Wikipedia]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),658,PC3sc0,10.21958/phenotype:658,Salt induced changes in Root System Architecture,3rd Principal Component - pulled using all RSA traits with prior scaling at 0 mM NaCl,,0,"1/2 MS medium, 1% agar, pH 5.8 with KOH, plants transferred to media containing 0 mM NaCl 4 days after germination. Root architecture scored 4 days after transfer to treatment media.",2019-05-06T12:47:15.841000Z,0,TO:0000043,root morphology trait,"""A plant axis morphology trait (TO:0000738) which is a quality of a root (PO:0025025)."" [GR:pj, PO:0025025, POC:cooperl]",,PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,EO:0001024,vertical agar growth medium,"""An agar growth medium (EO:0001023) involving use of solid growth media in a vertical orientation."" [PO:cooperl]",,PECO,Plant Environmental Conditions,https://bioportal.bioontology.org/ontologies/PECO,UO:0000186,dimensionless unit,"""A unit which is a standard measure of physical quantity consisting of only a numerical number without any units."" [Wikipedia:Wikipedia]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),650,Apical0,10.21958/phenotype:650,Salt induced changes in Root System Architecture,EZ-Rhizo - length of the Apical Zone at 0 mM NaCl,,0,"1/2 MS medium, 1% agar, pH 5.8 with KOH, plants transferred to media containing 0 mM NaCl 4 days after germination. Root architecture scored 4 days after transfer to treatment media.",2019-05-06T12:47:15.838000Z,0,TO:0000043,root morphology trait,"""A plant axis morphology trait (TO:0000738) which is a quality of a root (PO:0025025)."" [GR:pj, PO:0025025, POC:cooperl]",,PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,EO:0001024,vertical agar growth medium,"""An agar growth medium (EO:0001023) involving use of solid growth media in a vertical orientation."" [PO:cooperl]",,PECO,Plant Environmental Conditions,https://bioportal.bioontology.org/ontologies/PECO,UO:0000001,length unit,"""A unit which is a standard measure of the distance between two points."" [Wikipedia:Wikipedia]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),120,DTFplantingLoc2008,10.21958/phenotype:120,Flowering time in simulated seasons,,,,,2016-07-04T11:16:56.183000Z,0,TO:0000344,days to flowering trait,"""A flowering time trait (TO:0002616)which is the number of days required for an individual flower (PO:0009046), a whole plant (PO:0000003) or a plant population to reach flowering stage (PO:0007616) from a predetermined time point (e.g. the date of seed sowing, seedling transplant, or seedling emergence)."" [GR:pj, TO:cooperl]","Often determinded by either pollen shedding, exsertion of the anthers or simply opening of the flower.",PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,,,,,,,,UO:0000186,dimensionless unit,"""A unit which is a standard measure of physical quantity consisting of only a numerical number without any units."" [Wikipedia:Wikipedia]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),15,Storage 28 days,10.21958/phenotype:15,"Atwell et. al, Nature 2010",Primary dormancy was measured as the progressive increase of germination rate measured after 28 days of dry storage,,,,2016-06-27T14:14:00.780000Z,0,TO:0000253,seed dormancy,,,PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,EO:0007269,growth chamber study,"""The treatment involving study type in which plants were grown in growth chambers."" [GR:pj]",,PECO,Plant Environmental Conditions,https://bioportal.bioontology.org/ontologies/PECO,UO:0000187,percent,"""A dimensionless ratio unit which denotes numbers as fractions of 100."" [Wikipedia:Wikipedia]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),695,aLRLpMRL125,10.21958/phenotype:695,Salt induced changes in Root System Architecture,EZ-Rhizo - the average length of lateral root per main root length at 125 mM NaCl,,0,"1/2 MS medium, 1% agar, pH 5.8 with KOH, plants transferred to media containing 125 mM NaCl 4 days after germination. Root architecture scored 8 days after transfer to treatment media.",2019-05-06T12:47:15.857000Z,0,TO:0000043,root morphology trait,"""A plant axis morphology trait (TO:0000738) which is a quality of a root (PO:0025025)."" [GR:pj, PO:0025025, POC:cooperl]",,PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,EO:0001024,vertical agar growth medium,"""An agar growth medium (EO:0001023) involving use of solid growth media in a vertical orientation."" [PO:cooperl]",,PECO,Plant Environmental Conditions,https://bioportal.bioontology.org/ontologies/PECO,UO:0000190,ratio,"""A dimensionless unit which denotes an amount or magnitude of one quantity relative to another."" [Wikipedia:Wikipedia]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),48,8W,10.21958/phenotype:48,"Atwell et. al, Nature 2010",Number of days required for the bolt height to reach 5cm,,,,2016-06-27T14:14:01.519000Z,0,TO:0000344,days to flowering trait,"""A flowering time trait (TO:0002616)which is the number of days required for an individual flower (PO:0009046), a whole plant (PO:0000003) or a plant population to reach flowering stage (PO:0007616) from a predetermined time point (e.g. the date of seed sowing, seedling transplant, or seedling emergence)."" [GR:pj, TO:cooperl]","Often determinded by either pollen shedding, exsertion of the anthers or simply opening of the flower.",PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,EO:0007269,growth chamber study,"""The treatment involving study type in which plants were grown in growth chambers."" [GR:pj]",,PECO,Plant Environmental Conditions,https://bioportal.bioontology.org/ontologies/PECO,UO:0000033,day,"""A time unit which is equal to 24 hours."" [Wikipedia:Wikipedia]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),767,root length day007 minusZn,10.21958/phenotype:767,Root growth under Zn deficiency Bouain et al. 2018,Primary root growth has been measured with the Brat software.,,0,"Arabidopsis plants have been grown on plates containing zinc deficiency (-Zn) medium in presence of 1% (wt/vol) sucrose and 0.8% (wt/vol) agar, over 7 days starting three days after imbibition.",2019-07-28T11:31:29.576000Z,0,TO:0000227,root length,"""A root morphology trait (TO:0000043) which is the length of one or more roots (PO:0009005)."" [GR:jcl\nGR\:pj, TO:austin_meier\nTO\:cooperl]",refer to PATO:0000122- A 1-D extent quality which is equal to the distance between two points.,PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,EO:0007147,plant growth medium,"""An abiotic plant treatment (EO:0007191) involving the use of a solid or liquid substrate for growing plants or tissue-cultured plant samples."" [GR:pj, PO:cooperl]",,PECO,Plant Environmental Conditions,https://bioportal.bioontology.org/ontologies/PECO,UO:0000241,micron pixel,"""A spatial resolution unit which is equal to a pixel size of one micrometer."" [Wikipedia:Wikipedia]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),57,Chlorosis 16,10.21958/phenotype:57,"Atwell et. al, Nature 2010","Results expressed as binary data, determined by the presence (1) or absence (0) of chlorosis in all 4 plants / accession after 5wks of growth",,,,2016-06-27T14:14:01.561000Z,0,TO:0006060,leaf chlorosis,"""A leaf color trait (TO:0006060) describing the yellowing of leaves, due to insufficient production of chlorophyll."" [GR:Karthik, TO:moorel]",Leaf surface affected by abiotic stresses like insecticides and cold temperature as evidenced by chlorotic tissue.,PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,EO:0007269,growth chamber study,"""The treatment involving study type in which plants were grown in growth chambers."" [GR:pj]",,PECO,Plant Environmental Conditions,https://bioportal.bioontology.org/ontologies/PECO,UO:0000186,dimensionless unit,"""A unit which is a standard measure of physical quantity consisting of only a numerical number without any units."" [Wikipedia:Wikipedia]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),81,K39,10.21958/phenotype:81,"Atwell et. al, Nature 2010","Potassium concentrations in leaves, grown in soil. Elemental analysis was performed with an ICP-MS (PerkinElmer). Sample normalized to calculated weights as described in Baxter et al., 2008",,,,2016-06-27T14:14:01.691000Z,0,TO:0000513,potassium concentration,"""The total potassium ion concentration measured in a plant or a plant part or plant extract."" [GR:pj]",,PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,EO:0007269,growth chamber study,"""The treatment involving study type in which plants were grown in growth chambers."" [GR:pj]",,PECO,Plant Environmental Conditions,https://bioportal.bioontology.org/ontologies/PECO,UO:0000051,concentration unit,"""A unit which represents a standard measurement of how much of a given substance there is mixed with another substance."" [UOC:GVG]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),61,Anthocyanin 16,10.21958/phenotype:61,"Atwell et. al, Nature 2010","Results expressed as binary data, determined by the presence (1) or absence (0) of anthocyanin in all 4 plants / accession after 5wks of growth",,,,2016-06-27T14:14:01.595000Z,0,TO:0000071,anthocyanin content,"""The anthocyanin content in a plant or plant part."" [ISBN:198506732]","Anthocyanin is the red to purple pigments composed of soluble glycosides of anthocyanidins, present in leaves and floral tissue. Usually the pigment is produced under stress conditions. Amounts of anthocyanin produced depend on stored sugar and sunlight. The more stored sugar in the leaf and brighter the autumn days, the more intense red. Anthocyanin production also increases as phosphates move out of the leaves; the lack of phosphates in young leaves can also lead to the production of anthocyanin.",PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,EO:0007269,growth chamber study,"""The treatment involving study type in which plants were grown in growth chambers."" [GR:pj]",,PECO,Plant Environmental Conditions,https://bioportal.bioontology.org/ontologies/PECO,UO:0000186,dimensionless unit,"""A unit which is a standard measure of physical quantity consisting of only a numerical number without any units."" [Wikipedia:Wikipedia]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),19,Chlorosis 22,10.21958/phenotype:19,"Atwell et. al, Nature 2010","Results expressed as binary data, determined by the presence (1) or absence (0) of chlorosis in all 4 plants / accession after 5wks of growth",,,,2016-06-27T14:14:00.800000Z,0,TO:0006060,leaf chlorosis,"""A leaf color trait (TO:0006060) describing the yellowing of leaves, due to insufficient production of chlorophyll."" [GR:Karthik, TO:moorel]",Leaf surface affected by abiotic stresses like insecticides and cold temperature as evidenced by chlorotic tissue.,PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,EO:0007269,growth chamber study,"""The treatment involving study type in which plants were grown in growth chambers."" [GR:pj]",,PECO,Plant Environmental Conditions,https://bioportal.bioontology.org/ontologies/PECO,UO:0000186,dimensionless unit,"""A unit which is a standard measure of physical quantity consisting of only a numerical number without any units."" [Wikipedia:Wikipedia]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),766,root length day006 minusZn,10.21958/phenotype:766,Root growth under Zn deficiency Bouain et al. 2018,Primary root growth has been measured with the Brat software.,,0,"Arabidopsis plants have been grown on plates containing zinc deficiency (-Zn) medium in presence of 1% (wt/vol) sucrose and 0.8% (wt/vol) agar, over 7 days starting three days after imbibition.",2019-07-28T11:31:29.575000Z,0,TO:0000227,root length,"""A root morphology trait (TO:0000043) which is the length of one or more roots (PO:0009005)."" [GR:jcl\nGR\:pj, TO:austin_meier\nTO\:cooperl]",refer to PATO:0000122- A 1-D extent quality which is equal to the distance between two points.,PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,EO:0007147,plant growth medium,"""An abiotic plant treatment (EO:0007191) involving the use of a solid or liquid substrate for growing plants or tissue-cultured plant samples."" [GR:pj, PO:cooperl]",,PECO,Plant Environmental Conditions,https://bioportal.bioontology.org/ontologies/PECO,UO:0000241,micron pixel,"""A spatial resolution unit which is equal to a pixel size of one micrometer."" [Wikipedia:Wikipedia]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),728,deltaRGR P Fe norm on Fe norm,10.21958/phenotype:728,Root growth rates under nutrient deficiency,individual root growth was measured as the mean of 3 Arabidopsis seedlings. This phenotype is the differences of the normalized root growth rates for seedlings growing under -P and -Fe compared to seedlings only growing under -Fe,,0,"Seedlings were grown on MS plates at 22°C in a growth chamber with long day conditions (16h light, 8h dark)",2019-07-16T09:11:48.623000Z,0,TO:0000516,relative root length,"""The relative length of the root determined after a given treatment as compared to the one determined under normal conditions."" [GR:pj]",,PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,EO:0007147,plant growth medium,"""An abiotic plant treatment (EO:0007191) involving the use of a solid or liquid substrate for growing plants or tissue-cultured plant samples."" [GR:pj, PO:cooperl]",,PECO,Plant Environmental Conditions,https://bioportal.bioontology.org/ontologies/PECO,UO:0000190,ratio,"""A dimensionless unit which denotes an amount or magnitude of one quantity relative to another."" [Wikipedia:Wikipedia]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),644,Straight0,10.21958/phenotype:644,Salt induced changes in Root System Architecture,EZ-Rhizo - main root straightness expressed as ratio between main root vector length (straight) and the main root path length (observed) at 0 mM NaCl,,0,"1/2 MS medium, 1% agar, pH 5.8 with KOH, plants transferred to media containing 75 mM NaCl 4 days after germination. Root architecture scored 4 days after transfer to treatment media.",2019-05-06T12:47:15.835000Z,0,TO:0000043,root morphology trait,"""A plant axis morphology trait (TO:0000738) which is a quality of a root (PO:0025025)."" [GR:pj, PO:0025025, POC:cooperl]",,PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,EO:0001024,vertical agar growth medium,"""An agar growth medium (EO:0001023) involving use of solid growth media in a vertical orientation."" [PO:cooperl]",,PECO,Plant Environmental Conditions,https://bioportal.bioontology.org/ontologies/PECO,UO:0000190,ratio,"""A dimensionless unit which denotes an amount or magnitude of one quantity relative to another."" [Wikipedia:Wikipedia]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),691,Basal125,10.21958/phenotype:691,Salt induced changes in Root System Architecture,EZ-Rhizo - length of the Basal Zone at 125 mM NaCl,,0,"1/2 MS medium, 1% agar, pH 5.8 with KOH, plants transferred to media containing 125 mM NaCl 4 days after germination. Root architecture scored 8 days after transfer to treatment media.",2019-05-06T12:47:15.855000Z,0,TO:0000043,root morphology trait,"""A plant axis morphology trait (TO:0000738) which is a quality of a root (PO:0025025)."" [GR:pj, PO:0025025, POC:cooperl]",,PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,EO:0001024,vertical agar growth medium,"""An agar growth medium (EO:0001023) involving use of solid growth media in a vertical orientation."" [PO:cooperl]",,PECO,Plant Environmental Conditions,https://bioportal.bioontology.org/ontologies/PECO,UO:0000001,length unit,"""A unit which is a standard measure of the distance between two points."" [Wikipedia:Wikipedia]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),697,PC2sc125,10.21958/phenotype:697,Salt induced changes in Root System Architecture,2nd Principal Component - pulled using all RSA traits with prior scaling at 125 mM NaCl,,0,"1/2 MS medium, 1% agar, pH 5.8 with KOH, plants transferred to media containing 125 mM NaCl 4 days after germination. Root architecture scored 8 days after transfer to treatment media.",2019-05-06T12:47:15.858000Z,0,TO:0000043,root morphology trait,"""A plant axis morphology trait (TO:0000738) which is a quality of a root (PO:0025025)."" [GR:pj, PO:0025025, POC:cooperl]",,PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,EO:0001024,vertical agar growth medium,"""An agar growth medium (EO:0001023) involving use of solid growth media in a vertical orientation."" [PO:cooperl]",,PECO,Plant Environmental Conditions,https://bioportal.bioontology.org/ontologies/PECO,UO:0000186,dimensionless unit,"""A unit which is a standard measure of physical quantity consisting of only a numerical number without any units."" [Wikipedia:Wikipedia]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),721,RGR Zn,10.21958/phenotype:721,Root growth rates under nutrient deficiency,individual root growth was measured as the mean of 3 Arabidopsis seedlings between day 4 and 6 on MS plates. This phenotype is the root growth rates for seedlings growing under -Zn.,,0,"Seedlings were grown on MS plates at 22°C in a growth chamber with long day conditions (16h light, 8h dark)",2019-07-16T09:11:48.577000Z,0,TO:0000516,relative root length,"""The relative length of the root determined after a given treatment as compared to the one determined under normal conditions."" [GR:pj]",,PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,EO:0007147,plant growth medium,"""An abiotic plant treatment (EO:0007191) involving the use of a solid or liquid substrate for growing plants or tissue-cultured plant samples."" [GR:pj, PO:cooperl]",,PECO,Plant Environmental Conditions,https://bioportal.bioontology.org/ontologies/PECO,UO:0000280,rate unit,"""A unit which represents a standard measurement occurrence of a process per unit time."" [UOC:GVG]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),677,PC2sc75,10.21958/phenotype:677,Salt induced changes in Root System Architecture,2nd Principal Component - pulled using all RSA traits with prior scaling at 75 mM NaCl,,0,"1/2 MS medium, 1% agar, pH 5.8 with KOH, plants transferred to media containing 75 mM NaCl 4 days after germination. Root architecture scored 8 days after transfer to treatment media.",2019-05-06T12:47:15.849000Z,0,TO:0000043,root morphology trait,"""A plant axis morphology trait (TO:0000738) which is a quality of a root (PO:0025025)."" [GR:pj, PO:0025025, POC:cooperl]",,PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,EO:0001024,vertical agar growth medium,"""An agar growth medium (EO:0001023) involving use of solid growth media in a vertical orientation."" [PO:cooperl]",,PECO,Plant Environmental Conditions,https://bioportal.bioontology.org/ontologies/PECO,UO:0000186,dimensionless unit,"""A unit which is a standard measure of physical quantity consisting of only a numerical number without any units."" [Wikipedia:Wikipedia]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),104,SDV,10.21958/phenotype:104,"Atwell et. al, Nature 2010","Number of days following stratification to opening of first flower. The experiment was stopped at 200 d, and accessions that had not flowered at that point were assigned a value of 200",,,,2016-06-27T14:14:01.812000Z,0,TO:0000344,days to flowering trait,"""A flowering time trait (TO:0002616)which is the number of days required for an individual flower (PO:0009046), a whole plant (PO:0000003) or a plant population to reach flowering stage (PO:0007616) from a predetermined time point (e.g. the date of seed sowing, seedling transplant, or seedling emergence)."" [GR:pj, TO:cooperl]","Often determinded by either pollen shedding, exsertion of the anthers or simply opening of the flower.",PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,EO:0007269,growth chamber study,"""The treatment involving study type in which plants were grown in growth chambers."" [GR:pj]",,PECO,Plant Environmental Conditions,https://bioportal.bioontology.org/ontologies/PECO,UO:0000033,day,"""A time unit which is equal to 24 hours."" [Wikipedia:Wikipedia]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),5,Na23,10.21958/phenotype:5,"Atwell et. al, Nature 2010","Sodium concentrations in leaves, grown in soil. Elemental analysis was performed with an ICP-MS (PerkinElmer). Sample normalized to calculated weights as described in Baxter et al., 2008",,,,2016-06-27T14:14:00.731000Z,0,TO:0000526,sodium concentration,"""The total sodium ion concentration measured in a given volume of a plant or a plant part or plant extract."" [GR:pj]",,PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,EO:0007269,growth chamber study,"""The treatment involving study type in which plants were grown in growth chambers."" [GR:pj]",,PECO,Plant Environmental Conditions,https://bioportal.bioontology.org/ontologies/PECO,UO:0000051,concentration unit,"""A unit which represents a standard measurement of how much of a given substance there is mixed with another substance."" [UOC:GVG]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),91,S34,10.21958/phenotype:91,"Atwell et. al, Nature 2010","Sulfur concentrations in leaves, grown in soil. Elemental analysis was performed with an ICP-MS (PerkinElmer). Sample normalized to calculated weights as described in Baxter et al., 2008",,,,2016-06-27T14:14:01.738000Z,0,TO:0006046,sulfur concentration,"""A mineral and ion content related trait (TO:0000465) which is the concentration of sulfur (CHEBI:26835) in some plant structure (PO:0009011)."" [GR:Karthik]",,PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,EO:0007269,growth chamber study,"""The treatment involving study type in which plants were grown in growth chambers."" [GR:pj]",,PECO,Plant Environmental Conditions,https://bioportal.bioontology.org/ontologies/PECO,UO:0000051,concentration unit,"""A unit which represents a standard measurement of how much of a given substance there is mixed with another substance."" [UOC:GVG]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),283,As75,10.21958/phenotype:283,Ion Concentration,Arsenic concentrations in leaves,,,,2017-03-21T12:58:51.198000Z,0,TO:0006054,arsenic concentration,"""A mineral and ion content related trait (TO:0000465) which is the concentration of arsenic (CHEBI:22632) in some plant structure (PO:0009011)."" [GR:Karthik]",,PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,EO:0007269,growth chamber study,"""The treatment involving study type in which plants were grown in growth chambers."" [GR:pj]",,PECO,Plant Environmental Conditions,https://bioportal.bioontology.org/ontologies/PECO,UO:0000051,concentration unit,"""A unit which represents a standard measurement of how much of a given substance there is mixed with another substance."" [UOC:GVG]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,6
Arabidopsis thaliana (NCBI: 3702),54,B11,10.21958/phenotype:54,"Atwell et. al, Nature 2010","Boron concentrations in leaves, grown in soil. Elemental analysis was performed with an ICP-MS (PerkinElmer). Sample normalized to calculated weights as described in Baxter et al., 2008",,,,2016-06-27T14:14:01.547000Z,0,TO:0006043,boron concentration,"""A mineral and ion content related trait (TO:0000465) which is the concentration of boron (CHEBI:22916) in some plant structure (PO:0009011)."" [GR:Karthik]",,PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,EO:0007269,growth chamber study,"""The treatment involving study type in which plants were grown in growth chambers."" [GR:pj]",,PECO,Plant Environmental Conditions,https://bioportal.bioontology.org/ontologies/PECO,UO:0000051,concentration unit,"""A unit which represents a standard measurement of how much of a given substance there is mixed with another substance."" [UOC:GVG]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),29,FLC,10.21958/phenotype:29,"Atwell et. al, Nature 2010",RNA was extracted from leaves after 4 wks of growth. FLC gene expression levels were determined by Northern hybridization quantified relative to $Beta;-TUBULIN expression,,,,2016-06-27T14:14:01.427000Z,0,TO:0002616,flowering time trait,"""A plant phenological trait (TO:0000933) which is a quality of the timing of anthesis (flowering stage; PO:0007616)."" [GR:pj, TO:cooperl]","Often influenced by the environment that includes, day light, temperature and geographic location.",PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,EO:0007269,growth chamber study,"""The treatment involving study type in which plants were grown in growth chambers."" [GR:pj]",,PECO,Plant Environmental Conditions,https://bioportal.bioontology.org/ontologies/PECO,UO:0000190,ratio,"""A dimensionless unit which denotes an amount or magnitude of one quantity relative to another."" [Wikipedia:Wikipedia]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),4,Seed bank 133-91,10.21958/phenotype:4,"Atwell et. al, Nature 2010",Genotypes consistently decreased their percentage of germination between 91 and 133 days of dry storage. The time point for this sudden reduction in germination rate was scored by the slope between germination percentages at these two time points,,,,2016-06-27T14:14:00.629000Z,0,TO:0000253,seed dormancy,,,PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,EO:0007269,growth chamber study,"""The treatment involving study type in which plants were grown in growth chambers."" [GR:pj]",,PECO,Plant Environmental Conditions,https://bioportal.bioontology.org/ontologies/PECO,UO:0000186,dimensionless unit,"""A unit which is a standard measure of physical quantity consisting of only a numerical number without any units."" [Wikipedia:Wikipedia]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),698,PC3sc125,10.21958/phenotype:698,Salt induced changes in Root System Architecture,3rd Principal Component - pulled using all RSA traits with prior scaling at 125 mM NaCl,,0,"1/2 MS medium, 1% agar, pH 5.8 with KOH, plants transferred to media containing 75 mM NaCl 4 days after germination. Root architecture scored 8 days after transfer to treatment media.",2019-05-06T12:47:15.858000Z,0,TO:0000043,root morphology trait,"""A plant axis morphology trait (TO:0000738) which is a quality of a root (PO:0025025)."" [GR:pj, PO:0025025, POC:cooperl]",,PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,EO:0001024,vertical agar growth medium,"""An agar growth medium (EO:0001023) involving use of solid growth media in a vertical orientation."" [PO:cooperl]",,PECO,Plant Environmental Conditions,https://bioportal.bioontology.org/ontologies/PECO,UO:0000186,dimensionless unit,"""A unit which is a standard measure of physical quantity consisting of only a numerical number without any units."" [Wikipedia:Wikipedia]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),686,LRDpMR125,10.21958/phenotype:686,Salt induced changes in Root System Architecture,EZ-Rhizo - Lateral Root Density per cm of Main Root at 125 mM NaCl,,0,"1/2 MS medium, 1% agar, pH 5.8 with KOH, plants transferred to media containing 125 mM NaCl 4 days after germination. Root architecture scored 8 days after transfer to treatment media.",2019-05-06T12:47:15.853000Z,0,TO:0000043,root morphology trait,"""A plant axis morphology trait (TO:0000738) which is a quality of a root (PO:0025025)."" [GR:pj, PO:0025025, POC:cooperl]",,PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,EO:0001024,vertical agar growth medium,"""An agar growth medium (EO:0001023) involving use of solid growth media in a vertical orientation."" [PO:cooperl]",,PECO,Plant Environmental Conditions,https://bioportal.bioontology.org/ontologies/PECO,UO:0000189,count unit,"""A dimensionless unit which denotes a simple count of things."" [MGED:MGED]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),681,MRVL125,10.21958/phenotype:681,Salt induced changes in Root System Architecture,EZ-Rhizo - Main Root Vector Length (straight line from beginning to end of the main root) at 125 mM NaCl,,0,"1/2 MS medium, 1% agar, pH 5.8 with KOH, plants transferred to media containing 125 mM NaCl 4 days after germination. Root architecture scored 8 days after transfer to treatment media.",2019-05-06T12:47:15.851000Z,0,TO:0000043,root morphology trait,"""A plant axis morphology trait (TO:0000738) which is a quality of a root (PO:0025025)."" [GR:pj, PO:0025025, POC:cooperl]",,PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,EO:0001024,vertical agar growth medium,"""An agar growth medium (EO:0001023) involving use of solid growth media in a vertical orientation."" [PO:cooperl]",,PECO,Plant Environmental Conditions,https://bioportal.bioontology.org/ontologies/PECO,UO:0000190,ratio,"""A dimensionless unit which denotes an amount or magnitude of one quantity relative to another."" [Wikipedia:Wikipedia]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),96,Silique 22,10.21958/phenotype:96,"Atwell et. al, Nature 2010",The length of 5 siliques was measured for each accession after growth had concluded,,,,2016-06-27T14:14:01.774000Z,0,TO:0002626,fruit length,"""A fruit morphology trait (TO:0002629) which is the length of a fruit (PO:0009001)."" [GR:pj, PO:0009001, TO:moorel]",Refer to length (PATO:0000122): A 1-D extent quality which is equal to the distance between two points.,PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,EO:0007269,growth chamber study,"""The treatment involving study type in which plants were grown in growth chambers."" [GR:pj]",,PECO,Plant Environmental Conditions,https://bioportal.bioontology.org/ontologies/PECO,UO:0000015,centimeter,"""A length unit which is equal to one hundredth of a meter or 10^[-2] m."" [NIST:NIST]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),743,PZ-mean Total length day004,10.21958/phenotype:743,Root growth rates under nutrient deficiency,individual root growth was measured as the mean of 3 Arabidopsis seedlings.,,0,"Seedlings were grown on MS plates at 22°C in a growth chamber with long day conditions (16h light, 8h dark)",2019-07-16T09:11:48.632000Z,0,TO:0000227,root length,"""A root morphology trait (TO:0000043) which is the length of one or more roots (PO:0009005)."" [GR:jcl\nGR\:pj, TO:austin_meier\nTO\:cooperl]",refer to PATO:0000122- A 1-D extent quality which is equal to the distance between two points.,PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,EO:0007147,plant growth medium,"""An abiotic plant treatment (EO:0007191) involving the use of a solid or liquid substrate for growing plants or tissue-cultured plant samples."" [GR:pj, PO:cooperl]",,PECO,Plant Environmental Conditions,https://bioportal.bioontology.org/ontologies/PECO,UO:0000241,micron pixel,"""A spatial resolution unit which is equal to a pixel size of one micrometer."" [Wikipedia:Wikipedia]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),10,Bs,10.21958/phenotype:10,"Atwell et. al, Nature 2010","Four days after inoculation, leaves were scored by eye for disease symptom using a scale from 0 (no visible symptom) to 10 (leaves collapse and turn yellow), with an increment of 1.",,,,2016-06-27T14:14:00.755000Z,0,TO:0000315,bacterial disease resistance,"""The resistance exhibited by a plant or a group of plants (population) in response to the disease caused by a bacterial pathogen infection as compared to the susceptible and/or the reference plants of the same species."" [GR:pj]",It represents the damage done by the diease and/or the pathogen to the plant. The damage is a direct measure of resistance to the particular bacterial strain causing the disease.,PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,EO:0007269,growth chamber study,"""The treatment involving study type in which plants were grown in growth chambers."" [GR:pj]",,PECO,Plant Environmental Conditions,https://bioportal.bioontology.org/ontologies/PECO,UO:0000189,count unit,"""A dimensionless unit which denotes a simple count of things."" [MGED:MGED]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),105,Mg25,10.21958/phenotype:105,"Atwell et. al, Nature 2010","Magnesium concentrations in leaves, grown in soil. Elemental analysis was performed with an ICP-MS (PerkinElmer). Sample normalized to calculated weights as described in Baxter et al., 2008",,,,2016-06-27T14:14:01.817000Z,0,TO:0006044,magnesium concentration,"""A mineral and ion content related trait (TO:0000465) which is the concentration of magnesium (CHEBI:25108) in some plant structure (PO:0009011)."" [GR:Karthik]",,PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,EO:0007269,growth chamber study,"""The treatment involving study type in which plants were grown in growth chambers."" [GR:pj]",,PECO,Plant Environmental Conditions,https://bioportal.bioontology.org/ontologies/PECO,UO:0000051,concentration unit,"""A unit which represents a standard measurement of how much of a given substance there is mixed with another substance."" [UOC:GVG]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),35,Noco2,10.21958/phenotype:35,"Atwell et. al, Nature 2010","All interactions were scored specifically on first true leaves as compatible, incompatible or intermediate depending on the consistency of presence / absence of sporangiophores determined on 5-10 seedlings of each genotype with three independent replications",,,,2016-06-27T14:14:01.457000Z,0,TO:0002703,protist disease resistance,"""The resistance exhibited by a plant or a group of plants (population) in response to the disease caused by a protist infection as compared to the susceptible and/or the reference plants of the same species."" [GR:pj]",,PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,EO:0007269,growth chamber study,"""The treatment involving study type in which plants were grown in growth chambers."" [GR:pj]",,PECO,Plant Environmental Conditions,https://bioportal.bioontology.org/ontologies/PECO,UO:0000186,dimensionless unit,"""A unit which is a standard measure of physical quantity consisting of only a numerical number without any units."" [Wikipedia:Wikipedia]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),643,MRVA0,10.21958/phenotype:643,Salt induced changes in Root System Architecture,EZ-Rhizo - Main Root Vector Angle at 0 mM NaCl,,0,"1/2 MS medium, 1% agar, pH 5.8 with KOH, plants transferred to media containing 0 mM NaCl 4 days after germination. Root architecture scored 4 days after transfer to treatment media.",2019-05-06T12:47:15.835000Z,0,TO:0000043,root morphology trait,"""A plant axis morphology trait (TO:0000738) which is a quality of a root (PO:0025025)."" [GR:pj, PO:0025025, POC:cooperl]",,PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,EO:0001024,vertical agar growth medium,"""An agar growth medium (EO:0001023) involving use of solid growth media in a vertical orientation."" [PO:cooperl]",,PECO,Plant Environmental Conditions,https://bioportal.bioontology.org/ontologies/PECO,UO:0000185,degree,"""A plane angle unit which is equal to 1/360 of a full rotation or 1.7453310^[-2] rad."" [Wikipedia:Wikipedia]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),107,As,10.21958/phenotype:107,"Atwell et. al, Nature 2010","Four days after inoculation, leaves were scored by eye for disease symptom using a scale from 0 (no visible symptom) to 10 (leaves collapse and turn yellow), with an increment of 1.",,,,2016-06-27T14:14:01.827000Z,0,TO:0000315,bacterial disease resistance,"""The resistance exhibited by a plant or a group of plants (population) in response to the disease caused by a bacterial pathogen infection as compared to the susceptible and/or the reference plants of the same species."" [GR:pj]",It represents the damage done by the diease and/or the pathogen to the plant. The damage is a direct measure of resistance to the particular bacterial strain causing the disease.,PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,EO:0007269,growth chamber study,"""The treatment involving study type in which plants were grown in growth chambers."" [GR:pj]",,PECO,Plant Environmental Conditions,https://bioportal.bioontology.org/ontologies/PECO,UO:0000186,dimensionless unit,"""A unit which is a standard measure of physical quantity consisting of only a numerical number without any units."" [Wikipedia:Wikipedia]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),6,Leaf serr 10,10.21958/phenotype:6,"Atwell et. al, Nature 2010",Average severity of serration across 4 plants was scored between 0 (entire lamina) and 1.5 (jagged serration) after 8 weeks of growth,,,,2016-06-27T14:14:00.736000Z,0,TO:0006063,leaf margin serrated,"""A leaf margin morphology trait (TO:0002635) which is a notched or grooved leaf margin (PO:0020128)."" [GR:curators, PO:0020128, POC:cooperl]",Refer to serrated (PATO:0001206): A shape quality inhering in a bearer by virtue of having sharp straight-edged teeth pointing to the apex.,PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,EO:0007269,growth chamber study,"""The treatment involving study type in which plants were grown in growth chambers."" [GR:pj]",,PECO,Plant Environmental Conditions,https://bioportal.bioontology.org/ontologies/PECO,UO:0000186,dimensionless unit,"""A unit which is a standard measure of physical quantity consisting of only a numerical number without any units."" [Wikipedia:Wikipedia]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),86,FT Field,10.21958/phenotype:86,"Atwell et. al, Nature 2010",Flowering time was scored as the number of days between germination date and appearance of the first flower,,,,2016-06-27T14:14:01.715000Z,0,TO:0000344,days to flowering trait,"""A flowering time trait (TO:0002616)which is the number of days required for an individual flower (PO:0009046), a whole plant (PO:0000003) or a plant population to reach flowering stage (PO:0007616) from a predetermined time point (e.g. the date of seed sowing, seedling transplant, or seedling emergence)."" [GR:pj, TO:cooperl]","Often determinded by either pollen shedding, exsertion of the anthers or simply opening of the flower.",PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,EO:0007269,growth chamber study,"""The treatment involving study type in which plants were grown in growth chambers."" [GR:pj]",,PECO,Plant Environmental Conditions,https://bioportal.bioontology.org/ontologies/PECO,UO:0000033,day,"""A time unit which is equal to 24 hours."" [Wikipedia:Wikipedia]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),1401,Leaf K Mine (μg/g),10.21958/phenotype:1401,Pb Mine soil,"K concentrations in leaves, cultivated in Pb-enriched mine soil. Elemental analysis was performed with an ICP-OES (PerkinElmer).",,0,"Seeds of the Arabidopsis thaliana HapMap cohort (360 natural populations) were surface sterilized using 3:10 bleach solution in constant agitation for 10 minutes and rinsed with sterile water six times. Seeds were stratified for 4 days at 4 C in 0.1% agar solution to synchronize germination, then 5 seeds per accession were sown in two soil types with contrasted Pb concentrations into pot trays. The control soil was a mix of commercial potting mix soil with perlite (2:1); the mine soil was a mix of soil from an ancient lead mine (Mina de Can Vergeli; 41°53'42.4""N 3°01'11.7""E), commercial potting mix soil and perlite (2:1:1). Trays were placed in a growth chamber with 150 mmol/m2s of light intensity, 12h light/12h dark photoperiod, and 25 ºC /20 ºC day/night temperature. Trays were bottom-watered twice weekly with deionized water. Fifty-day old plants were harvested to measure its nutrient mineral contents.",2021-07-02T08:52:48.140489Z,0,TO:0000513,potassium concentration,"""The total potassium ion concentration measured in a plant or a plant part or plant extract."" [GR:pj]",,PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,EO:0007248,green house study,"""The treatment where the plants were grown under green house conditions. This may involve supplemental treatments in addition to any standard conditions."" [GR:pj]",,PECO,Plant Environmental Conditions,https://bioportal.bioontology.org/ontologies/PECO,UO:0000023,microgram,"""A mass unit which is equal to one millionth of a gram or 10^[-6] g."" [UOC:GVG]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),93,DW ,10.21958/phenotype:93,"Atwell et. al, Nature 2010",Lesioning measured by dry weight,,,,2016-06-27T14:14:01.754000Z,0,TO:0000652,leaf necrosis,"""A leaf morphology trait (TO:0000748) which is the leaf surface area affected by abiotic stresses like insecticides and cold temperature as evidenced by chlorotic and/or necrotic tissue."" [GR:pj, TO:cooperl]","If you are annotating to this term, please add an additional annotation to vascular leaf morphology (TO:0000419) or non-vascular leaf morphology trait (TO:0000925), depending on the species.",PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,EO:0007269,growth chamber study,"""The treatment involving study type in which plants were grown in growth chambers."" [GR:pj]",,PECO,Plant Environmental Conditions,https://bioportal.bioontology.org/ontologies/PECO,UO:0000021,gram,"""A mass unit which is equal to one thousandth of a kilogram or 10^[-3] kg."" [NIST:NIST]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),89,LD,10.21958/phenotype:89,"Atwell et. al, Nature 2010","Number of days following stratification to opening of first flower. The experiment was stopped at 200 d, and accessions that had not flowered at that point were assigned a value of 200",,,,2016-06-27T14:14:01.729000Z,0,TO:0000344,days to flowering trait,"""A flowering time trait (TO:0002616)which is the number of days required for an individual flower (PO:0009046), a whole plant (PO:0000003) or a plant population to reach flowering stage (PO:0007616) from a predetermined time point (e.g. the date of seed sowing, seedling transplant, or seedling emergence)."" [GR:pj, TO:cooperl]","Often determinded by either pollen shedding, exsertion of the anthers or simply opening of the flower.",PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,EO:0007269,growth chamber study,"""The treatment involving study type in which plants were grown in growth chambers."" [GR:pj]",,PECO,Plant Environmental Conditions,https://bioportal.bioontology.org/ontologies/PECO,UO:0000033,day,"""A time unit which is equal to 24 hours."" [Wikipedia:Wikipedia]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),1391,Leaf Pb Mine (μg/g),10.21958/phenotype:1391,Pb Mine soil,,,,,2021-07-02T08:52:48.133953Z,0,,,,,,,,,,,,,,,,,,,,,,1
Arabidopsis thaliana (NCBI: 3702),31,FT10,10.21958/phenotype:31,"Atwell et. al, Nature 2010","Plants were checked bi-weekly for presence of first buds, and the average flowering time of 4 plants of the same accession were collected",,,,2016-06-27T14:14:01.436000Z,0,TO:0000344,days to flowering trait,"""A flowering time trait (TO:0002616)which is the number of days required for an individual flower (PO:0009046), a whole plant (PO:0000003) or a plant population to reach flowering stage (PO:0007616) from a predetermined time point (e.g. the date of seed sowing, seedling transplant, or seedling emergence)."" [GR:pj, TO:cooperl]","Often determinded by either pollen shedding, exsertion of the anthers or simply opening of the flower.",PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,EO:0007269,growth chamber study,"""The treatment involving study type in which plants were grown in growth chambers."" [GR:pj]",,PECO,Plant Environmental Conditions,https://bioportal.bioontology.org/ontologies/PECO,UO:0000033,day,"""A time unit which is equal to 24 hours."" [Wikipedia:Wikipedia]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),723,RGE Fe norm,10.21958/phenotype:723,Root growth rates under nutrient deficiency,individual root growth was measured as the mean of 3 Arabidopsis seedlings between day 4 and 6 on MS plates. This phenotype is the normalized root growth rates (compared to growth on MS) for seedlings growing under -Fe.,,0,"Seedlings were grown on MS plates at 22°C in a growth chamber with long day conditions (16h light, 8h dark)",2019-07-16T09:11:48.578000Z,0,TO:0000516,relative root length,"""The relative length of the root determined after a given treatment as compared to the one determined under normal conditions."" [GR:pj]",,PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,EO:0007147,plant growth medium,"""An abiotic plant treatment (EO:0007191) involving the use of a solid or liquid substrate for growing plants or tissue-cultured plant samples."" [GR:pj, PO:cooperl]",,PECO,Plant Environmental Conditions,https://bioportal.bioontology.org/ontologies/PECO,UO:0000190,ratio,"""A dimensionless unit which denotes an amount or magnitude of one quantity relative to another."" [Wikipedia:Wikipedia]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),285,Rb85,10.21958/phenotype:285,Ion Concentration,Rubidium concentrations in leaves,,,,2017-03-21T12:58:51.200000Z,0,TO:0006009,lodicule morphology trait,"""A plant organ morphology trait (TO:0000736) which is a quality of a lodicule (PO:0009036) and its parts."" [GR:pj, PO:0009036, TO:moorel]",,PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,EO:0007269,growth chamber study,"""The treatment involving study type in which plants were grown in growth chambers."" [GR:pj]",,PECO,Plant Environmental Conditions,https://bioportal.bioontology.org/ontologies/PECO,UO:0000051,concentration unit,"""A unit which represents a standard measurement of how much of a given substance there is mixed with another substance."" [UOC:GVG]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,6
Arabidopsis thaliana (NCBI: 3702),50,DSDS50,10.21958/phenotype:50,"Atwell et. al, Nature 2010","Number of days of seed dry storage required to reach 50% germination, or DSDS50 value (Alonso-Blanco et al., 2003)",,,,2016-06-27T14:14:01.528000Z,0,TO:0006069,DSDS50,"""A measure of seed dormancy defined as the days of seed dry storage required to reach 50% germination (DSDS50)."" [GR:Karthik]",,PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,EO:0007269,growth chamber study,"""The treatment involving study type in which plants were grown in growth chambers."" [GR:pj]",,PECO,Plant Environmental Conditions,https://bioportal.bioontology.org/ontologies/PECO,UO:0000033,day,"""A time unit which is equal to 24 hours."" [Wikipedia:Wikipedia]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),692,Branched125,10.21958/phenotype:692,Salt induced changes in Root System Architecture,EZ-Rhizo - length of the Branched Zone at 125 mM NaCl,,0,"1/2 MS medium, 1% agar, pH 5.8 with KOH, plants transferred to media containing 125 mM NaCl 4 days after germination. Root architecture scored 8 days after transfer to treatment media.",2019-05-06T12:47:15.856000Z,0,TO:0000043,root morphology trait,"""A plant axis morphology trait (TO:0000738) which is a quality of a root (PO:0025025)."" [GR:pj, PO:0025025, POC:cooperl]",,PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,EO:0001024,vertical agar growth medium,"""An agar growth medium (EO:0001023) involving use of solid growth media in a vertical orientation."" [PO:cooperl]",,PECO,Plant Environmental Conditions,https://bioportal.bioontology.org/ontologies/PECO,UO:0000001,length unit,"""A unit which is a standard measure of the distance between two points."" [Wikipedia:Wikipedia]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),14,Width 16,10.21958/phenotype:14,"Atwell et. al, Nature 2010",The diameters of 4 plants of each accession were measured and the results were expressed as an average value across all available replicates.Plants were scored 5 weeks post germination,,,,2016-06-27T14:14:00.775000Z,0,TO:0006062,plant width,"""The average width of a plant measured across an axis such as the main stem/stalk."" [GR:pj]",,PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,EO:0007269,growth chamber study,"""The treatment involving study type in which plants were grown in growth chambers."" [GR:pj]",,PECO,Plant Environmental Conditions,https://bioportal.bioontology.org/ontologies/PECO,UO:0000015,centimeter,"""A length unit which is equal to one hundredth of a meter or 10^[-2] m."" [NIST:NIST]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),66,Emwa1,10.21958/phenotype:66,"Atwell et. al, Nature 2010","All interactions were scored specifically on first true leaves as compatible, incompatible or intermediate depending on the consistency of presence / absence of sporangiophores determined on 5-10 seedlings of each genotype with three independent replications",,,,2016-06-27T14:14:01.619000Z,0,TO:0002703,protist disease resistance,"""The resistance exhibited by a plant or a group of plants (population) in response to the disease caused by a protist infection as compared to the susceptible and/or the reference plants of the same species."" [GR:pj]",,PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,EO:0007269,growth chamber study,"""The treatment involving study type in which plants were grown in growth chambers."" [GR:pj]",,PECO,Plant Environmental Conditions,https://bioportal.bioontology.org/ontologies/PECO,UO:0000186,dimensionless unit,"""A unit which is a standard measure of physical quantity consisting of only a numerical number without any units."" [Wikipedia:Wikipedia]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),661,MRVL75,10.21958/phenotype:661,Salt induced changes in Root System Architecture,EZ-Rhizo - Main Root Vector Length (straight line from beginning to end of the main root) at 75 mM NaCl,,0,"1/2 MS medium, 1% agar, pH 5.8 with KOH, plants transferred to media containing 75 mM NaCl 4 days after germination. Root architecture scored 8 days after transfer to treatment media.",2019-05-06T12:47:15.842000Z,0,TO:0000043,root morphology trait,"""A plant axis morphology trait (TO:0000738) which is a quality of a root (PO:0025025)."" [GR:pj, PO:0025025, POC:cooperl]",,PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,EO:0001024,vertical agar growth medium,"""An agar growth medium (EO:0001023) involving use of solid growth media in a vertical orientation."" [PO:cooperl]",,PECO,Plant Environmental Conditions,https://bioportal.bioontology.org/ontologies/PECO,UO:0000001,length unit,"""A unit which is a standard measure of the distance between two points."" [Wikipedia:Wikipedia]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),109,SizePlantingSummer2009,10.21958/phenotype:109,Flowering time in simulated seasons,,,,,2016-07-04T11:16:56.128000Z,0,,,,,,,,,,,,,,,UO:0000186,dimensionless unit,"""A unit which is a standard measure of physical quantity consisting of only a numerical number without any units."" [Wikipedia:Wikipedia]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),13,Cd114,10.21958/phenotype:13,"Atwell et. al, Nature 2010","Cadmium concentrations in leaves, grown in soil. Elemental analysis was performed with an ICP-MS (PerkinElmer). Sample normalized to calculated weights as described in Baxter et al., 2008",,,,2016-06-27T14:14:00.770000Z,0,TO:0006059,cadmium concentration,"""A mineral and ion content related trait (TO:0000465) which is the concentration of cadmium (CHEBI:22978) in some plant structure (PO:0009011).\n."" [GR:Karthik]",,PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,EO:0007269,growth chamber study,"""The treatment involving study type in which plants were grown in growth chambers."" [GR:pj]",,PECO,Plant Environmental Conditions,https://bioportal.bioontology.org/ontologies/PECO,UO:0000051,concentration unit,"""A unit which represents a standard measurement of how much of a given substance there is mixed with another substance."" [UOC:GVG]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),722,RGR P Fe,10.21958/phenotype:722,Root growth rates under nutrient deficiency,individual root growth was measured as the mean of 3 Arabidopsis seedlings between day 4 and 6 on MS plates. This phenotype is the root growth rates for seedlings growing under -P and -Fe.,,0,"Seedlings were grown on MS plates at 22°C in a growth chamber with long day conditions (16h light, 8h dark)",2019-07-16T09:11:48.577000Z,0,TO:0000516,relative root length,"""The relative length of the root determined after a given treatment as compared to the one determined under normal conditions."" [GR:pj]",,PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,EO:0007147,plant growth medium,"""An abiotic plant treatment (EO:0007191) involving the use of a solid or liquid substrate for growing plants or tissue-cultured plant samples."" [GR:pj, PO:cooperl]",,PECO,Plant Environmental Conditions,https://bioportal.bioontology.org/ontologies/PECO,UO:0000280,rate unit,"""A unit which represents a standard measurement occurrence of a process per unit time."" [UOC:GVG]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),133,YieldPlantingSummer2009,10.21958/phenotype:133,Flowering time in simulated seasons,Yield was recorded as dry seed weight in grams in Experiment 2 with two replicates under each condition,,,,2016-07-04T11:16:56.389000Z,0,TO:0000181,seed weight,"""A seed morphology trait (TO:0000184) which is the weight of a seed (PO:0009010)."" [GR:pj, ICIS:1058, PO:0009010, TO:moorel]",Seed weight is a component of seed yield (TO:0000905) and seed quality (TO:0000162). Refer to weight (PATO:0000128): A physical quality inhering in a bearer that has mass near a gravitational body.,PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,,,,,,,,UO:0000021,gram,"""A mass unit which is equal to one thousandth of a kilogram or 10^[-3] kg."" [NIST:NIST]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),724,RGR P norm,10.21958/phenotype:724,Root growth rates under nutrient deficiency,individual root growth was measured as the mean of 3 Arabidopsis seedlings between day 4 and 6 on MS plates. This phenotype is the normalized root growth rates (compared to growth on MS) for seedlings growing under -P.,,0,"Seedlings were grown on MS plates at 22°C in a growth chamber with long day conditions (16h light, 8h dark)",2019-07-16T09:11:48.621000Z,0,TO:0000516,relative root length,"""The relative length of the root determined after a given treatment as compared to the one determined under normal conditions."" [GR:pj]",,PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,EO:0007147,plant growth medium,"""An abiotic plant treatment (EO:0007191) involving the use of a solid or liquid substrate for growing plants or tissue-cultured plant samples."" [GR:pj, PO:cooperl]",,PECO,Plant Environmental Conditions,https://bioportal.bioontology.org/ontologies/PECO,UO:0000190,ratio,"""A dimensionless unit which denotes an amount or magnitude of one quantity relative to another."" [Wikipedia:Wikipedia]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),2,At2 CFU2,10.21958/phenotype:2,"Atwell et. al, Nature 2010",,,,,2016-06-27T14:14:00.614000Z,0,TO:0000315,bacterial disease resistance,"""The resistance exhibited by a plant or a group of plants (population) in response to the disease caused by a bacterial pathogen infection as compared to the susceptible and/or the reference plants of the same species."" [GR:pj]",It represents the damage done by the diease and/or the pathogen to the plant. The damage is a direct measure of resistance to the particular bacterial strain causing the disease.,PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,EO:0007269,growth chamber study,"""The treatment involving study type in which plants were grown in growth chambers."" [GR:pj]",,PECO,Plant Environmental Conditions,https://bioportal.bioontology.org/ontologies/PECO,UO:0000210,colony forming unit,"""A dimensionless count unit which a measure of viable bacterial numbers."" [Wikipedia:Wikipedia]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),640,MRL0,10.21958/phenotype:640,Salt induced changes in Root System Architecture,EZ-Rhizo - Main Root Length at 0 mM NaCl,,0,"1/2 MS medium, 1% agar, pH 5.8 with KOH, plants transferred to media containing 0 mM NaCl 4 days after germination. Root architecture scored 4 days after transfer to treatment media.",2019-05-06T12:47:15.833000Z,0,TO:0000043,root morphology trait,"""A plant axis morphology trait (TO:0000738) which is a quality of a root (PO:0025025)."" [GR:pj, PO:0025025, POC:cooperl]",,PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,EO:0001024,vertical agar growth medium,"""An agar growth medium (EO:0001023) involving use of solid growth media in a vertical orientation."" [PO:cooperl]",,PECO,Plant Environmental Conditions,https://bioportal.bioontology.org/ontologies/PECO,UO:0000001,length unit,"""A unit which is a standard measure of the distance between two points."" [Wikipedia:Wikipedia]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),75,Anthocyanin 22,10.21958/phenotype:75,"Atwell et. al, Nature 2010","Results expressed as binary data, determined by the presence (1) or absence (0) of anthocyanin in all 4 plants / accession after 5wks of growth",,,,2016-06-27T14:14:01.662000Z,0,TO:0000071,anthocyanin content,"""The anthocyanin content in a plant or plant part."" [ISBN:198506732]","Anthocyanin is the red to purple pigments composed of soluble glycosides of anthocyanidins, present in leaves and floral tissue. Usually the pigment is produced under stress conditions. Amounts of anthocyanin produced depend on stored sugar and sunlight. The more stored sugar in the leaf and brighter the autumn days, the more intense red. Anthocyanin production also increases as phosphates move out of the leaves; the lack of phosphates in young leaves can also lead to the production of anthocyanin.",PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,EO:0007269,growth chamber study,"""The treatment involving study type in which plants were grown in growth chambers."" [GR:pj]",,PECO,Plant Environmental Conditions,https://bioportal.bioontology.org/ontologies/PECO,UO:0000186,dimensionless unit,"""A unit which is a standard measure of physical quantity consisting of only a numerical number without any units."" [Wikipedia:Wikipedia]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),128,Size spain 2009 (1st experiment),10.21958/phenotype:128,Flowering time in simulated seasons,,,,,2016-07-04T11:16:56.367000Z,0,,,,,,,,,,,,,,,UO:0000015,centimeter,"""A length unit which is equal to one hundredth of a meter or 10^[-2] m."" [NIST:NIST]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),735,F-mean Total length day005,10.21958/phenotype:735,Root growth rates under nutrient deficiency,individual root growth was measured as the mean of 3 Arabidopsis seedlings.,,0,"Seedlings were grown on MS plates at 22°C in a growth chamber with long day conditions (16h light, 8h dark)",2019-07-16T09:11:48.627000Z,0,TO:0000227,root length,"""A root morphology trait (TO:0000043) which is the length of one or more roots (PO:0009005)."" [GR:jcl\nGR\:pj, TO:austin_meier\nTO\:cooperl]",refer to PATO:0000122- A 1-D extent quality which is equal to the distance between two points.,PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,EO:0007147,plant growth medium,"""An abiotic plant treatment (EO:0007191) involving the use of a solid or liquid substrate for growing plants or tissue-cultured plant samples."" [GR:pj, PO:cooperl]",,PECO,Plant Environmental Conditions,https://bioportal.bioontology.org/ontologies/PECO,UO:0000241,micron pixel,"""A spatial resolution unit which is equal to a pixel size of one micrometer."" [Wikipedia:Wikipedia]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),745,Z-mean Total length day003,10.21958/phenotype:745,Root growth rates under nutrient deficiency,individual root growth was measured as the mean of 3 Arabidopsis seedlings.,,0,"Seedlings were grown on MS plates at 22°C in a growth chamber with long day conditions (16h light, 8h dark)",2019-07-16T09:11:48.633000Z,0,TO:0000227,root length,"""A root morphology trait (TO:0000043) which is the length of one or more roots (PO:0009005)."" [GR:jcl\nGR\:pj, TO:austin_meier\nTO\:cooperl]",refer to PATO:0000122- A 1-D extent quality which is equal to the distance between two points.,PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,EO:0007147,plant growth medium,"""An abiotic plant treatment (EO:0007191) involving the use of a solid or liquid substrate for growing plants or tissue-cultured plant samples."" [GR:pj, PO:cooperl]",,PECO,Plant Environmental Conditions,https://bioportal.bioontology.org/ontologies/PECO,UO:0000241,micron pixel,"""A spatial resolution unit which is equal to a pixel size of one micrometer."" [Wikipedia:Wikipedia]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),1309,CDT (Controlled seed Deterioration Treatment),10.21958/phenotype:1309,"Seed longevity (Renard et. al., 2020)",The germination ratio was scored after 7 days and corrected with the control germination ratio.,,0,"Seeds were artificially aged at 38ºC in 75% relative-humidity chamber for 14 days. Chlorine gas sterilization, 7 days of seed vernalization and MS media sowing was used for 267 ecotypes to ensure same treatment and growing conditions.",2020-08-26T11:32:38.372231Z,0,TO:0000435,seed longevity,,,PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,EO:0007319,warm/hot air temperature regimen,"""The treatment involving an exposure to above optimal air temperature, which may depend on the study type or the regional environment."" [GR:pj]",,PECO,Plant Environmental Conditions,https://bioportal.bioontology.org/ontologies/PECO,UO:0000190,ratio,"""A dimensionless unit which denotes an amount or magnitude of one quantity relative to another."" [Wikipedia:Wikipedia]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),142,Mature cell length,10.21958/phenotype:142,Mejion,The cell length of fully elongated cells (mature-cell length) was measured in the cortex tissue layer,,,,2016-07-04T11:35:18.755000Z,0,TO:0002687,cell elongation trait,"""An assay to determine the variation in the length of the plant cell due to cell growth and elongation."" [GR:pj]",,PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,,,,,,,,UO:0000017,micrometer,"""A length unit which is equal to one millionth of a meter or 10^[-6] m."" [NIST:NIST]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),740,PF-mean Total length day004,10.21958/phenotype:740,Root growth rates under nutrient deficiency,individual root growth was measured as the mean of 3 Arabidopsis seedlings.,,0,"Seedlings were grown on MS plates at 22°C in a growth chamber with long day conditions (16h light, 8h dark)",2019-07-16T09:11:48.630000Z,0,TO:0000227,root length,"""A root morphology trait (TO:0000043) which is the length of one or more roots (PO:0009005)."" [GR:jcl\nGR\:pj, TO:austin_meier\nTO\:cooperl]",refer to PATO:0000122- A 1-D extent quality which is equal to the distance between two points.,PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,EO:0007147,plant growth medium,"""An abiotic plant treatment (EO:0007191) involving the use of a solid or liquid substrate for growing plants or tissue-cultured plant samples."" [GR:pj, PO:cooperl]",,PECO,Plant Environmental Conditions,https://bioportal.bioontology.org/ontologies/PECO,UO:0000241,micron pixel,"""A spatial resolution unit which is equal to a pixel size of one micrometer."" [Wikipedia:Wikipedia]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),747,Z-mean Total length day005,10.21958/phenotype:747,Root growth rates under nutrient deficiency,individual root growth was measured as the mean of 3 Arabidopsis seedlings.,,,"Seedlings were grown on MS plates at 22°C in a growth chamber with long day conditions (16h light, 8h dark)",2019-07-16T09:11:48.634000Z,0,TO:0000227,root length,"""A root morphology trait (TO:0000043) which is the length of one or more roots (PO:0009005)."" [GR:jcl\nGR\:pj, TO:austin_meier\nTO\:cooperl]",refer to PATO:0000122- A 1-D extent quality which is equal to the distance between two points.,PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,EO:0007147,plant growth medium,"""An abiotic plant treatment (EO:0007191) involving the use of a solid or liquid substrate for growing plants or tissue-cultured plant samples."" [GR:pj, PO:cooperl]",,PECO,Plant Environmental Conditions,https://bioportal.bioontology.org/ontologies/PECO,UO:0000241,micron pixel,"""A spatial resolution unit which is equal to a pixel size of one micrometer."" [Wikipedia:Wikipedia]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),7,Emco5,10.21958/phenotype:7,"Atwell et. al, Nature 2010","All interactions were scored specifically on first true leaves as compatible, incompatible or intermediate depending on the consistency of presence / absence of sporangiophores determined on 5-10 seedlings of each genotype with three independent replications",,,,2016-06-27T14:14:00.741000Z,0,TO:0002703,protist disease resistance,"""The resistance exhibited by a plant or a group of plants (population) in response to the disease caused by a protist infection as compared to the susceptible and/or the reference plants of the same species."" [GR:pj]",,PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,EO:0007269,growth chamber study,"""The treatment involving study type in which plants were grown in growth chambers."" [GR:pj]",,PECO,Plant Environmental Conditions,https://bioportal.bioontology.org/ontologies/PECO,UO:0000186,dimensionless unit,"""A unit which is a standard measure of physical quantity consisting of only a numerical number without any units."" [Wikipedia:Wikipedia]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),651,Basal0,10.21958/phenotype:651,Salt induced changes in Root System Architecture,EZ-Rhizo - length of the Basal Zone at 0 mM NaCl,,0,"1/2 MS medium, 1% agar, pH 5.8 with KOH, plants transferred to media containing 0 mM NaCl 4 days after germination. Root architecture scored 4 days after transfer to treatment media.",2019-05-06T12:47:15.838000Z,0,TO:0000043,root morphology trait,"""A plant axis morphology trait (TO:0000738) which is a quality of a root (PO:0025025)."" [GR:pj, PO:0025025, POC:cooperl]",,PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,EO:0001024,vertical agar growth medium,"""An agar growth medium (EO:0001023) involving use of solid growth media in a vertical orientation."" [PO:cooperl]",,PECO,Plant Environmental Conditions,https://bioportal.bioontology.org/ontologies/PECO,UO:0000001,length unit,"""A unit which is a standard measure of the distance between two points."" [Wikipedia:Wikipedia]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),38,MT GH,10.21958/phenotype:38,"Atwell et. al, Nature 2010",Number of days between last flower senescence and complete plant senescence,,,,2016-06-27T14:14:01.472000Z,0,TO:0000366,reproductive growth time,"""Measure of time taken by the reproductive growth phase in a plant's life cycle."" [GR:pj]",,PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,EO:0007269,growth chamber study,"""The treatment involving study type in which plants were grown in growth chambers."" [GR:pj]",,PECO,Plant Environmental Conditions,https://bioportal.bioontology.org/ontologies/PECO,UO:0000033,day,"""A time unit which is equal to 24 hours."" [Wikipedia:Wikipedia]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),757,root length day004,10.21958/phenotype:757,Root growth under Zn deficiency Bouain et al. 2018,Primary root growth has been measured with the Brat software.,,0,"Arabidopsis plants have been grown on plates containing full growth medium in presence of 1% (wt/vol) sucrose and 0.8% (wt/vol) agar, over 7 days starting three days after imbibition.",2019-07-28T11:31:29.567000Z,0,TO:0000227,root length,"""A root morphology trait (TO:0000043) which is the length of one or more roots (PO:0009005)."" [GR:jcl\nGR\:pj, TO:austin_meier\nTO\:cooperl]",refer to PATO:0000122- A 1-D extent quality which is equal to the distance between two points.,PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,EO:0007147,plant growth medium,"""An abiotic plant treatment (EO:0007191) involving the use of a solid or liquid substrate for growing plants or tissue-cultured plant samples."" [GR:pj, PO:cooperl]",,PECO,Plant Environmental Conditions,https://bioportal.bioontology.org/ontologies/PECO,UO:0000241,micron pixel,"""A spatial resolution unit which is equal to a pixel size of one micrometer."" [Wikipedia:Wikipedia]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),78,LES,10.21958/phenotype:78,"Atwell et. al, Nature 2010","Lesioning is the presence in older leaves of necrotic spots, that spread to the whole leaf. Lesioned accessions were divided in three subgroups (mild, intermediate and severe) according to the severity of lesioning",,,,2016-06-27T14:14:01.676000Z,0,TO:0000652,leaf necrosis,"""A leaf morphology trait (TO:0000748) which is the leaf surface area affected by abiotic stresses like insecticides and cold temperature as evidenced by chlorotic and/or necrotic tissue."" [GR:pj, TO:cooperl]","If you are annotating to this term, please add an additional annotation to vascular leaf morphology (TO:0000419) or non-vascular leaf morphology trait (TO:0000925), depending on the species.",PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,EO:0007269,growth chamber study,"""The treatment involving study type in which plants were grown in growth chambers."" [GR:pj]",,PECO,Plant Environmental Conditions,https://bioportal.bioontology.org/ontologies/PECO,UO:0000186,dimensionless unit,"""A unit which is a standard measure of physical quantity consisting of only a numerical number without any units."" [Wikipedia:Wikipedia]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),730,MS-mean Total length day003,10.21958/phenotype:730,Root growth rates under nutrient deficiency,individual root growth was measured as the mean of 3 Arabidopsis seedlings.,,0,"Seedlings were grown on MS plates at 22°C in a growth chamber with long day conditions (16h light, 8h dark)",2019-07-16T09:11:48.624000Z,0,TO:0000227,root length,"""A root morphology trait (TO:0000043) which is the length of one or more roots (PO:0009005)."" [GR:jcl\nGR\:pj, TO:austin_meier\nTO\:cooperl]",refer to PATO:0000122- A 1-D extent quality which is equal to the distance between two points.,PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,EO:0007147,plant growth medium,"""An abiotic plant treatment (EO:0007191) involving the use of a solid or liquid substrate for growing plants or tissue-cultured plant samples."" [GR:pj, PO:cooperl]",,PECO,Plant Environmental Conditions,https://bioportal.bioontology.org/ontologies/PECO,UO:0000241,micron pixel,"""A spatial resolution unit which is equal to a pixel size of one micrometer."" [Wikipedia:Wikipedia]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),1402,Leaf Na Mine (μg/g),10.21958/phenotype:1402,Pb Mine soil,"Na concentrations in leaves, cultivated in Pb-enriched mine soil. Elemental analysis was performed with an ICP-OES (PerkinElmer).",,0,"Seeds of the Arabidopsis thaliana HapMap cohort (360 natural populations) were surface sterilized using 3:10 bleach solution in constant agitation for 10 minutes and rinsed with sterile water six times. Seeds were stratified for 4 days at 4 C in 0.1% agar solution to synchronize germination, then 5 seeds per accession were sown in two soil types with contrasted Pb concentrations into pot trays. The control soil was a mix of commercial potting mix soil with perlite (2:1); the mine soil was a mix of soil from an ancient lead mine (Mina de Can Vergeli; 41°53'42.4""N 3°01'11.7""E), commercial potting mix soil and perlite (2:1:1). Trays were placed in a growth chamber with 150 mmol/m2s of light intensity, 12h light/12h dark photoperiod, and 25 ºC /20 ºC day/night temperature. Trays were bottom-watered twice weekly with deionized water. Fifty-day old plants were harvested to measure its nutrient mineral contents.",2021-07-02T08:52:48.141120Z,0,TO:0000526,sodium concentration,"""The total sodium ion concentration measured in a given volume of a plant or a plant part or plant extract."" [GR:pj]",,PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,EO:0007248,green house study,"""The treatment where the plants were grown under green house conditions. This may involve supplemental treatments in addition to any standard conditions."" [GR:pj]",,PECO,Plant Environmental Conditions,https://bioportal.bioontology.org/ontologies/PECO,UO:0000023,microgram,"""A mass unit which is equal to one millionth of a gram or 10^[-6] g."" [UOC:GVG]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),1399,Leaf B Mine (μg/g),10.21958/phenotype:1399,Pb Mine soil,"B concentrations in leaves, cultivated in Pb-enriched mine soil. Elemental analysis was performed with an ICP-OES (PerkinElmer).",,0,"Seeds of the Arabidopsis thaliana HapMap cohort (360 natural populations) were surface sterilized using 3:10 bleach solution in constant agitation for 10 minutes and rinsed with sterile water six times. Seeds were stratified for 4 days at 4 C in 0.1% agar solution to synchronize germination, then 5 seeds per accession were sown in two soil types with contrasted Pb concentrations into pot trays. The control soil was a mix of commercial potting mix soil with perlite (2:1); the mine soil was a mix of soil from an ancient lead mine (Mina de Can Vergeli; 41°53'42.4""N 3°01'11.7""E), commercial potting mix soil and perlite (2:1:1). Trays were placed in a growth chamber with 150 mmol/m2s of light intensity, 12h light/12h dark photoperiod, and 25 ºC /20 ºC day/night temperature. Trays were bottom-watered twice weekly with deionized water. Fifty-day old plants were harvested to measure its nutrient mineral contents.",2021-07-02T08:52:48.139202Z,0,TO:0006043,boron concentration,"""A mineral and ion content related trait (TO:0000465) which is the concentration of boron (CHEBI:22916) in some plant structure (PO:0009011)."" [GR:Karthik]",,PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,EO:0007248,green house study,"""The treatment where the plants were grown under green house conditions. This may involve supplemental treatments in addition to any standard conditions."" [GR:pj]",,PECO,Plant Environmental Conditions,https://bioportal.bioontology.org/ontologies/PECO,UO:0000023,microgram,"""A mass unit which is equal to one millionth of a gram or 10^[-6] g."" [UOC:GVG]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),47,SD,10.21958/phenotype:47,"Atwell et. al, Nature 2010","Number of days following stratification to opening of first flower. The experiment was stopped at 200 d, and accessions that had not flowered at that point were assigned a value of 200",,,,2016-06-27T14:14:01.514000Z,0,TO:0000344,days to flowering trait,"""A flowering time trait (TO:0002616)which is the number of days required for an individual flower (PO:0009046), a whole plant (PO:0000003) or a plant population to reach flowering stage (PO:0007616) from a predetermined time point (e.g. the date of seed sowing, seedling transplant, or seedling emergence)."" [GR:pj, TO:cooperl]","Often determinded by either pollen shedding, exsertion of the anthers or simply opening of the flower.",PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,EO:0007269,growth chamber study,"""The treatment involving study type in which plants were grown in growth chambers."" [GR:pj]",,PECO,Plant Environmental Conditions,https://bioportal.bioontology.org/ontologies/PECO,UO:0000033,day,"""A time unit which is equal to 24 hours."" [Wikipedia:Wikipedia]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),20,Storage 7 days,10.21958/phenotype:20,"Atwell et. al, Nature 2010",Primary dormancy was measured as the progressive increase of germination rate measured after 7 days of dry storage,,,,2016-06-27T14:14:00.805000Z,0,TO:0000253,seed dormancy,,,PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,EO:0007269,growth chamber study,"""The treatment involving study type in which plants were grown in growth chambers."" [GR:pj]",,PECO,Plant Environmental Conditions,https://bioportal.bioontology.org/ontologies/PECO,UO:0000187,percent,"""A dimensionless ratio unit which denotes numbers as fractions of 100."" [Wikipedia:Wikipedia]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),1394,Leaf Mg Mine (μg/g),10.21958/phenotype:1394,Pb Mine soil,"Mg concentrations in leaves, cultivated in Pb-enriched mine soil. Elemental analysis was performed with an ICP-OES (PerkinElmer).",,0,"Seeds of the Arabidopsis thaliana HapMap cohort (360 natural populations) were surface sterilized using 3:10 bleach solution in constant agitation for 10 minutes and rinsed with sterile water six times. Seeds were stratified for 4 days at 4 C in 0.1% agar solution to synchronize germination, then 5 seeds per accession were sown in two soil types with contrasted Pb concentrations into pot trays. The control soil was a mix of commercial potting mix soil with perlite (2:1); the mine soil was a mix of soil from an ancient lead mine (Mina de Can Vergeli; 41°53'42.4""N 3°01'11.7""E), commercial potting mix soil and perlite (2:1:1). Trays were placed in a growth chamber with 150 mmol/m2s of light intensity, 12h light/12h dark photoperiod, and 25 ºC /20 ºC day/night temperature. Trays were bottom-watered twice weekly with deionized water. Fifty-day old plants were harvested to measure its nutrient mineral contents.",2021-07-02T08:52:48.135913Z,0,TO:0006044,magnesium concentration,"""A mineral and ion content related trait (TO:0000465) which is the concentration of magnesium (CHEBI:25108) in some plant structure (PO:0009011)."" [GR:Karthik]",,PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,EO:0007248,green house study,"""The treatment where the plants were grown under green house conditions. This may involve supplemental treatments in addition to any standard conditions."" [GR:pj]",,PECO,Plant Environmental Conditions,https://bioportal.bioontology.org/ontologies/PECO,UO:0000023,microgram,"""A mass unit which is equal to one millionth of a gram or 10^[-6] g."" [UOC:GVG]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),727,RGR P Fe norm,10.21958/phenotype:727,Root growth rates under nutrient deficiency,individual root growth was measured as the mean of 3 Arabidopsis seedlings between day 4 and 6 on MS plates. This phenotype is the normalized root growth rates (compared to growth on MS) for seedlings growing under -P and -Fe.,,0,"Seedlings were grown on MS plates at 22°C in a growth chamber with long day conditions (16h light, 8h dark)",2019-07-16T09:11:48.623000Z,0,TO:0000516,relative root length,"""The relative length of the root determined after a given treatment as compared to the one determined under normal conditions."" [GR:pj]",,PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,EO:0007147,plant growth medium,"""An abiotic plant treatment (EO:0007191) involving the use of a solid or liquid substrate for growing plants or tissue-cultured plant samples."" [GR:pj, PO:cooperl]",,PECO,Plant Environmental Conditions,https://bioportal.bioontology.org/ontologies/PECO,UO:0000190,ratio,"""A dimensionless unit which denotes an amount or magnitude of one quantity relative to another."" [Wikipedia:Wikipedia]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),1,FT Diameter Field,10.21958/phenotype:1,"Atwell et. al, Nature 2010",Longest diameter of the plant measured on the day the first flower was observed,,,,2016-06-27T14:14:00.607000Z,0,TO:0000241,leaf number,"""A shoot system morphology trait (TO:0000077) which is the number of leaves (PO:0025034) in a shoot system (PO:0009006) of a plant."" [GR:pj, TO:cooperl]",,PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,EO:0007269,growth chamber study,"""The treatment involving study type in which plants were grown in growth chambers."" [GR:pj]",,PECO,Plant Environmental Conditions,https://bioportal.bioontology.org/ontologies/PECO,UO:0000001,length unit,"""A unit which is a standard measure of the distance between two points."" [Wikipedia:Wikipedia]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),76,Zn66,10.21958/phenotype:76,"Atwell et. al, Nature 2010","Zinc concentrations in leaves, grown in soil. Elemental analysis was performed with an ICP-MS (PerkinElmer). Sample normalized to calculated weights as described in Baxter et al., 2008",,,,2016-06-27T14:14:01.666000Z,0,TO:0006053,zinc concentration,"""A zinc content (TO:0020090) which is the concentration of zinc (CHEBI:27364) in some plant structure (PO:0009011)"" [GR:Karthik]",,PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,EO:0007269,growth chamber study,"""The treatment involving study type in which plants were grown in growth chambers."" [GR:pj]",,PECO,Plant Environmental Conditions,https://bioportal.bioontology.org/ontologies/PECO,UO:0000051,concentration unit,"""A unit which represents a standard measurement of how much of a given substance there is mixed with another substance."" [UOC:GVG]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),18,Width 10,10.21958/phenotype:18,"Atwell et. al, Nature 2010",The diameters of 4 plants of each accession were measured and the results were expressed as an average value across all available replicates.Plants were scored 8 weeks post germination,,,,2016-06-27T14:14:00.796000Z,0,TO:0006062,plant width,"""The average width of a plant measured across an axis such as the main stem/stalk."" [GR:pj]",,PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,EO:0007269,growth chamber study,"""The treatment involving study type in which plants were grown in growth chambers."" [GR:pj]",,PECO,Plant Environmental Conditions,https://bioportal.bioontology.org/ontologies/PECO,UO:0000015,centimeter,"""A length unit which is equal to one hundredth of a meter or 10^[-2] m."" [NIST:NIST]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),110,Size sweden 2009 (2nd experiment),10.21958/phenotype:110,Flowering time in simulated seasons,,,,,2016-07-04T11:16:56.133000Z,0,,,,,,,,,,,,,,,UO:0000015,centimeter,"""A length unit which is equal to one hundredth of a meter or 10^[-2] m."" [NIST:NIST]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),145,M130T666,10.21958/phenotype:145,DAAR,LC-MS–based untargeted metabolite profiles of leaf tissue were collected for each accession. Metabolite feature with a mass-to-charge ratio of 130 and a retention time of 666 s,,,,2016-07-04T11:48:19.048000Z,0,TO:0000281,metabolite content trait,"""The trait associated with an assay to determine the affected metabolite's profile."" [GR:pj]",,PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,,,,,,,,UO:0000051,concentration unit,"""A unit which represents a standard measurement of how much of a given substance there is mixed with another substance."" [UOC:GVG]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),1392,Leaf P Mine (μg/g),10.21958/phenotype:1392,Pb Mine soil,"P concentrations in leaves, cultivated in Pb-enriched mine soil. Elemental analysis was performed with an ICP-OES (PerkinElmer).",,0,"Seeds of the Arabidopsis thaliana HapMap cohort (360 natural populations) were surface sterilized using 3:10 bleach solution in constant agitation for 10 minutes and rinsed with sterile water six times. Seeds were stratified for 4 days at 4 C in 0.1% agar solution to synchronize germination, then 5 seeds per accession were sown in two soil types with contrasted Pb concentrations into pot trays. The control soil was a mix of commercial potting mix soil with perlite (2:1); the mine soil was a mix of soil from an ancient lead mine (Mina de Can Vergeli; 41°53'42.4""N 3°01'11.7""E), commercial potting mix soil and perlite (2:1:1). Trays were placed in a growth chamber with 150 mmol/m2s of light intensity, 12h light/12h dark photoperiod, and 25 ºC /20 ºC day/night temperature. Trays were bottom-watered twice weekly with deionized water. Fifty-day old plants were harvested to measure its nutrient mineral contents.",2021-07-02T08:52:48.134621Z,0,TO:0006045,phosphorus concentration,"""A phosphorus content (TO:0001024) which is the concentration of phosphorus (CHEBI:26082) in some plant structure (PO:0009011)"" [GR:Karthik]",,PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,EO:0007248,green house study,"""The treatment where the plants were grown under green house conditions. This may involve supplemental treatments in addition to any standard conditions."" [GR:pj]",,PECO,Plant Environmental Conditions,https://bioportal.bioontology.org/ontologies/PECO,UO:0000023,microgram,"""A mass unit which is equal to one millionth of a gram or 10^[-6] g."" [UOC:GVG]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),129,DTFplantingSummer2009,10.21958/phenotype:129,Flowering time in simulated seasons,,,,,2016-07-04T11:16:56.371000Z,0,TO:0000344,days to flowering trait,"""A flowering time trait (TO:0002616)which is the number of days required for an individual flower (PO:0009046), a whole plant (PO:0000003) or a plant population to reach flowering stage (PO:0007616) from a predetermined time point (e.g. the date of seed sowing, seedling transplant, or seedling emergence)."" [GR:pj, TO:cooperl]","Often determinded by either pollen shedding, exsertion of the anthers or simply opening of the flower.",PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,,,,,,,,UO:0000186,dimensionless unit,"""A unit which is a standard measure of physical quantity consisting of only a numerical number without any units."" [Wikipedia:Wikipedia]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),27,Storage 56 days,10.21958/phenotype:27,"Atwell et. al, Nature 2010",Primary dormancy was measured as the progressive increase of germination rate measured after 56 days of dry storage,,,,2016-06-27T14:14:01.100000Z,0,TO:0000253,seed dormancy,,,PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,EO:0007269,growth chamber study,"""The treatment involving study type in which plants were grown in growth chambers."" [GR:pj]",,PECO,Plant Environmental Conditions,https://bioportal.bioontology.org/ontologies/PECO,UO:0000187,percent,"""A dimensionless ratio unit which denotes numbers as fractions of 100."" [Wikipedia:Wikipedia]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),143,Meristem zone length,10.21958/phenotype:143,Mejion,The size of the meristem was measured from the quiescent center to the onset of the rapid longitudinal cell expansion in the cortex tissue (meristem zone length),,,,2016-07-04T11:35:18.764000Z,0,TO:0002687,cell elongation trait,"""An assay to determine the variation in the length of the plant cell due to cell growth and elongation."" [GR:pj]",,PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,,,,,,,,UO:0000017,micrometer,"""A length unit which is equal to one millionth of a meter or 10^[-6] m."" [NIST:NIST]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),58,LFS GH,10.21958/phenotype:58,"Atwell et. al, Nature 2010",Number of days between germination and senescence of the last flower,,,,2016-06-27T14:14:01.566000Z,0,TO:0000366,reproductive growth time,"""Measure of time taken by the reproductive growth phase in a plant's life cycle."" [GR:pj]",,PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,EO:0007269,growth chamber study,"""The treatment involving study type in which plants were grown in growth chambers."" [GR:pj]",,PECO,Plant Environmental Conditions,https://bioportal.bioontology.org/ontologies/PECO,UO:0000033,day,"""A time unit which is equal to 24 hours."" [Wikipedia:Wikipedia]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),718,RGR MS,10.21958/phenotype:718,Root growth rates under nutrient deficiency,individual root growth was measured as the mean of 3 Arabidopsis seedlings between day 4 and 6 on MS plates. This phenotype is the root growth rates for seedlings growing in normal MS medium.,,0,"Seedlings were grown on MS plates at 22°C in a growth chamber with long day conditions (16h light, 8h dark)",2019-07-16T09:11:48.575000Z,0,TO:0000516,relative root length,"""The relative length of the root determined after a given treatment as compared to the one determined under normal conditions."" [GR:pj]",,PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,EO:0007147,plant growth medium,"""An abiotic plant treatment (EO:0007191) involving the use of a solid or liquid substrate for growing plants or tissue-cultured plant samples."" [GR:pj, PO:cooperl]",,PECO,Plant Environmental Conditions,https://bioportal.bioontology.org/ontologies/PECO,UO:0000280,rate unit,"""A unit which represents a standard measurement occurrence of a process per unit time."" [UOC:GVG]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),8,Leaf roll 16,10.21958/phenotype:8,"Atwell et. al, Nature 2010","Results expressed as binary data, determined by the presence (1) or absence (0) of rolled leaves in all 4 plants / accession at 5 weeks growth",,,,2016-06-27T14:14:00.745000Z,0,TO:0006064,rolled leaf,"""Leaf lamina rolled into a tube like structure."" [GR:Karthik]",,PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,EO:0007269,growth chamber study,"""The treatment involving study type in which plants were grown in growth chambers."" [GR:pj]",,PECO,Plant Environmental Conditions,https://bioportal.bioontology.org/ontologies/PECO,UO:0000186,dimensionless unit,"""A unit which is a standard measure of physical quantity consisting of only a numerical number without any units."" [Wikipedia:Wikipedia]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),667,LRDpBZ75,10.21958/phenotype:667,Salt induced changes in Root System Architecture,EZ-Rhizo - Lateral Root Density per cm of Branching Zone at 75 mM NaCl,,0,"1/2 MS medium, 1% agar, pH 5.8 with KOH, plants transferred to media containing 75 mM NaCl 4 days after germination. Root architecture scored 8 days after transfer to treatment media.",2019-05-06T12:47:15.845000Z,0,TO:0000043,root morphology trait,"""A plant axis morphology trait (TO:0000738) which is a quality of a root (PO:0025025)."" [GR:pj, PO:0025025, POC:cooperl]",,PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,EO:0001024,vertical agar growth medium,"""An agar growth medium (EO:0001023) involving use of solid growth media in a vertical orientation."" [PO:cooperl]",,PECO,Plant Environmental Conditions,https://bioportal.bioontology.org/ontologies/PECO,UO:0000189,count unit,"""A dimensionless unit which denotes a simple count of things."" [MGED:MGED]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),668,LRL75,10.21958/phenotype:668,Salt induced changes in Root System Architecture,EZ-Rhizo - cummulative lateral root length at 75 mM NaCl,,0,"1/2 MS medium, 1% agar, pH 5.8 with KOH, plants transferred to media containing 75 mM NaCl 4 days after germination. Root architecture scored 8 days after transfer to treatment media.",2019-05-06T12:47:15.845000Z,0,TO:0000043,root morphology trait,"""A plant axis morphology trait (TO:0000738) which is a quality of a root (PO:0025025)."" [GR:pj, PO:0025025, POC:cooperl]",,PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,EO:0001024,vertical agar growth medium,"""An agar growth medium (EO:0001023) involving use of solid growth media in a vertical orientation."" [PO:cooperl]",,PECO,Plant Environmental Conditions,https://bioportal.bioontology.org/ontologies/PECO,UO:0000001,length unit,"""A unit which is a standard measure of the distance between two points."" [Wikipedia:Wikipedia]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),1388,Rosette diameter Mine,10.21958/phenotype:1388,Pb Mine soil,Rosette diameter of 3 individuals per accession and soil type was measured weekly for 4 weeks.,,0,"Seeds of the Arabidopsis thaliana HapMap cohort (360 natural populations) were surface sterilized using 3:10 bleach solution in constant agitation for 10 minutes and rinsed with sterile water six times. Seeds were stratified for 4 days at 4 C in 0.1% agar solution to synchronize germination, then 5 seeds per accession were sown in two soil types with contrasted Pb concentrations into pot trays. The control soil was a mix of commercial potting mix soil with perlite (2:1); the mine soil was a mix of soil from an ancient lead mine (Mina de Can Vergeli; 41°53'42.4""N 3°01'11.7""E), commercial potting mix soil and perlite (2:1:1). Trays were placed in a growth chamber with 150 mmol/m2s of light intensity, 12h light/12h dark photoperiod, and 25 ºC /20 ºC day/night temperature. Trays were bottom-watered twice weekly with deionized water. Germination and survival were monitored and rosette diameter (RD) of 3 individuals per accession and soil type was measured weekly for 4 weeks.",2021-07-02T08:52:48.130967Z,0,TO:0000357,plant growth and development trait,"""A plant trait (TO:0000387) which is the growth (GO:0048590) and development (GO:0032502) of a plant anatomical entity (PO:0025131) or a constituent cellular component (GO:0005575)."" [GR:pj, TO:cooperl]",Growth and development traits are qualities of the development of the whole plant or plant parts.,PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,EO:0007248,green house study,"""The treatment where the plants were grown under green house conditions. This may involve supplemental treatments in addition to any standard conditions."" [GR:pj]",,PECO,Plant Environmental Conditions,https://bioportal.bioontology.org/ontologies/PECO,UO:0000016,millimeter,"""A length unit which is equal to one thousandth of a meter or 10^[-3] m."" [NIST:NIST]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),71,Trichome avg C,10.21958/phenotype:71,"Atwell et. al, Nature 2010",Measurements were collected from leaf disks removed from the 11th leaf of plants that had been treated with 0.6ml of a water control (C). Trichome density was calculated as the trichome number per disk divided by the disk area,,,,2016-06-27T14:14:01.643000Z,0,TO:0006066,leaf trichome density,"""Measurement of trichomes found in per unit area of a leaf."" [GR:curators]",,PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,EO:0007269,growth chamber study,"""The treatment involving study type in which plants were grown in growth chambers."" [GR:pj]",,PECO,Plant Environmental Conditions,https://bioportal.bioontology.org/ontologies/PECO,UO:0000189,count unit,"""A dimensionless unit which denotes a simple count of things."" [MGED:MGED]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),684,Straight125,10.21958/phenotype:684,Salt induced changes in Root System Architecture,EZ-Rhizo - main root straightness expressed as ratio between main root vector length (straight) and the main root path length (observed) at 125 mM NaCl,,0,"1/2 MS medium, 1% agar, pH 5.8 with KOH, plants transferred to media containing 75 mM NaCl 4 days after germination. Root architecture scored 8 days after transfer to treatment media.",2019-05-06T12:47:15.852000Z,0,TO:0000043,root morphology trait,"""A plant axis morphology trait (TO:0000738) which is a quality of a root (PO:0025025)."" [GR:pj, PO:0025025, POC:cooperl]",,PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,EO:0001024,vertical agar growth medium,"""An agar growth medium (EO:0001023) involving use of solid growth media in a vertical orientation."" [PO:cooperl]",,PECO,Plant Environmental Conditions,https://bioportal.bioontology.org/ontologies/PECO,UO:0000190,ratio,"""A dimensionless unit which denotes an amount or magnitude of one quantity relative to another."" [Wikipedia:Wikipedia]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),645,noLRpMR0,10.21958/phenotype:645,Salt induced changes in Root System Architecture,EZ-Rhizo - number of lateral roots per main root at 0 mM NaCl,,,"1/2 MS medium, 1% agar, pH 5.8 with KOH, plants transferred to media containing 0 mM NaCl 4 days after germination. Root architecture scored 4 days after transfer to treatment media.",2019-05-06T12:47:15.836000Z,0,TO:0000043,root morphology trait,"""A plant axis morphology trait (TO:0000738) which is a quality of a root (PO:0025025)."" [GR:pj, PO:0025025, POC:cooperl]",,PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,EO:0001024,vertical agar growth medium,"""An agar growth medium (EO:0001023) involving use of solid growth media in a vertical orientation."" [PO:cooperl]",,PECO,Plant Environmental Conditions,https://bioportal.bioontology.org/ontologies/PECO,UO:0000189,count unit,"""A dimensionless unit which denotes a simple count of things."" [MGED:MGED]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),146,M172T666,10.21958/phenotype:146,DAAR,LC-MS–based untargeted metabolite profiles of leaf tissue were collected for each accession. Metabolite feature with a mass-to-charge ratio of 172 and a retention time of 666 s,,,,2016-07-04T11:48:19.053000Z,0,TO:0000281,metabolite content trait,"""The trait associated with an assay to determine the affected metabolite's profile."" [GR:pj]",,PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,,,,,,,,UO:0000051,concentration unit,"""A unit which represents a standard measurement of how much of a given substance there is mixed with another substance."" [UOC:GVG]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),80,Emoy*,10.21958/phenotype:80,"Atwell et. al, Nature 2010","All interactions were scored specifically on first true leaves as compatible, incompatible or intermediate depending on the consistency of presence / absence of sporangiophores determined on 5-10 seedlings of each genotype with three independent replications",,,,2016-06-27T14:14:01.686000Z,0,TO:0002703,protist disease resistance,"""The resistance exhibited by a plant or a group of plants (population) in response to the disease caused by a protist infection as compared to the susceptible and/or the reference plants of the same species."" [GR:pj]",,PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,EO:0007269,growth chamber study,"""The treatment involving study type in which plants were grown in growth chambers."" [GR:pj]",,PECO,Plant Environmental Conditions,https://bioportal.bioontology.org/ontologies/PECO,UO:0000186,dimensionless unit,"""A unit which is a standard measure of physical quantity consisting of only a numerical number without any units."" [Wikipedia:Wikipedia]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),52,LC Duration GH,10.21958/phenotype:52,"Atwell et. al, Nature 2010",Number of days between germination and plant complete senescence,,,,2016-06-27T14:14:01.538000Z,0,TO:0000366,reproductive growth time,"""Measure of time taken by the reproductive growth phase in a plant's life cycle."" [GR:pj]",,PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,EO:0007269,growth chamber study,"""The treatment involving study type in which plants were grown in growth chambers."" [GR:pj]",,PECO,Plant Environmental Conditions,https://bioportal.bioontology.org/ontologies/PECO,UO:0000033,day,"""A time unit which is equal to 24 hours."" [Wikipedia:Wikipedia]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),1395,Leaf Zn Mine (μg/g),10.21958/phenotype:1395,Pb Mine soil,"Zinc concentrations in leaves, cultivated in Pb-enriched mine soil. Elemental analysis was performed with an ICP-OES (PerkinElmer).",,0,"Seeds of the Arabidopsis thaliana HapMap cohort (360 natural populations) were surface sterilized using 3:10 bleach solution in constant agitation for 10 minutes and rinsed with sterile water six times. Seeds were stratified for 4 days at 4 C in 0.1% agar solution to synchronize germination, then 5 seeds per accession were sown in two soil types with contrasted Pb concentrations into pot trays. The control soil was a mix of commercial potting mix soil with perlite (2:1); the mine soil was a mix of soil from an ancient lead mine (Mina de Can Vergeli; 41°53'42.4""N 3°01'11.7""E), commercial potting mix soil and perlite (2:1:1). Trays were placed in a growth chamber with 150 mmol/m2s of light intensity, 12h light/12h dark photoperiod, and 25 ºC /20 ºC day/night temperature. Trays were bottom-watered twice weekly with deionized water. Fifty-day old plants were harvested to measure its nutrient mineral contents.",2021-07-02T08:52:48.136560Z,0,TO:0006053,zinc concentration,"""A zinc content (TO:0020090) which is the concentration of zinc (CHEBI:27364) in some plant structure (PO:0009011)"" [GR:Karthik]",,PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,EO:0007248,green house study,"""The treatment where the plants were grown under green house conditions. This may involve supplemental treatments in addition to any standard conditions."" [GR:pj]",,PECO,Plant Environmental Conditions,https://bioportal.bioontology.org/ontologies/PECO,UO:0000023,microgram,"""A mass unit which is equal to one millionth of a gram or 10^[-6] g."" [UOC:GVG]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),132,DTF spain 2008 (1st experiment),10.21958/phenotype:132,Flowering time in simulated seasons,FT was recorded daily as days to flower after germination in Experiment 1 with four replicates under spain conditions,,,,2016-07-04T11:16:56.385000Z,0,TO:0000344,days to flowering trait,"""A flowering time trait (TO:0002616)which is the number of days required for an individual flower (PO:0009046), a whole plant (PO:0000003) or a plant population to reach flowering stage (PO:0007616) from a predetermined time point (e.g. the date of seed sowing, seedling transplant, or seedling emergence)."" [GR:pj, TO:cooperl]","Often determinded by either pollen shedding, exsertion of the anthers or simply opening of the flower.",PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,,,,,,,,UO:0000033,day,"""A time unit which is equal to 24 hours."" [Wikipedia:Wikipedia]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),738,P-mean Total length day005,10.21958/phenotype:738,Root growth rates under nutrient deficiency,individual root growth was measured as the mean of 3 Arabidopsis seedlings.,,0,"Seedlings were grown on MS plates at 22°C in a growth chamber with long day conditions (16h light, 8h dark)",2019-07-16T09:11:48.629000Z,0,TO:0000227,root length,"""A root morphology trait (TO:0000043) which is the length of one or more roots (PO:0009005)."" [GR:jcl\nGR\:pj, TO:austin_meier\nTO\:cooperl]",refer to PATO:0000122- A 1-D extent quality which is equal to the distance between two points.,PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,EO:0007147,plant growth medium,"""An abiotic plant treatment (EO:0007191) involving the use of a solid or liquid substrate for growing plants or tissue-cultured plant samples."" [GR:pj, PO:cooperl]",,PECO,Plant Environmental Conditions,https://bioportal.bioontology.org/ontologies/PECO,UO:0000241,micron pixel,"""A spatial resolution unit which is equal to a pixel size of one micrometer."" [Wikipedia:Wikipedia]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),84,At1,10.21958/phenotype:84,"Atwell et. al, Nature 2010",,,,,2016-06-27T14:14:01.705000Z,0,TO:0000315,bacterial disease resistance,"""The resistance exhibited by a plant or a group of plants (population) in response to the disease caused by a bacterial pathogen infection as compared to the susceptible and/or the reference plants of the same species."" [GR:pj]",It represents the damage done by the diease and/or the pathogen to the plant. The damage is a direct measure of resistance to the particular bacterial strain causing the disease.,PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,EO:0007269,growth chamber study,"""The treatment involving study type in which plants were grown in growth chambers."" [GR:pj]",,PECO,Plant Environmental Conditions,https://bioportal.bioontology.org/ontologies/PECO,UO:0000210,colony forming unit,"""A dimensionless count unit which a measure of viable bacterial numbers."" [Wikipedia:Wikipedia]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),762,root length day002 minusZn,10.21958/phenotype:762,Root growth under Zn deficiency Bouain et al. 2018,Primary root growth has been measured with the Brat software.,,0,"Arabidopsis plants have been grown on plates containing zinc deficiency (-Zn) medium in presence of 1% (wt/vol) sucrose and 0.8% (wt/vol) agar, over 7 days starting three days after imbibition.",2019-07-28T11:31:29.569000Z,0,TO:0000227,root length,"""A root morphology trait (TO:0000043) which is the length of one or more roots (PO:0009005)."" [GR:jcl\nGR\:pj, TO:austin_meier\nTO\:cooperl]",refer to PATO:0000122- A 1-D extent quality which is equal to the distance between two points.,PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,EO:0007147,plant growth medium,"""An abiotic plant treatment (EO:0007191) involving the use of a solid or liquid substrate for growing plants or tissue-cultured plant samples."" [GR:pj, PO:cooperl]",,PECO,Plant Environmental Conditions,https://bioportal.bioontology.org/ontologies/PECO,UO:0000241,micron pixel,"""A spatial resolution unit which is equal to a pixel size of one micrometer."" [Wikipedia:Wikipedia]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),276,Ca43,10.21958/phenotype:276,Ion Concentration,Calcium concentrations in leaves,,,,2017-03-21T12:58:51.185000Z,0,TO:0006047,calcium concentration,"""A mineral and ion content related trait (TO:0000465) which is the concentration of calcium (CHEBI:22985) in some plant structure (PO:0009011)."" [GR:Karthik]",,PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,EO:0007269,growth chamber study,"""The treatment involving study type in which plants were grown in growth chambers."" [GR:pj]",,PECO,Plant Environmental Conditions,https://bioportal.bioontology.org/ontologies/PECO,UO:0000051,concentration unit,"""A unit which represents a standard measurement of how much of a given substance there is mixed with another substance."" [UOC:GVG]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,6
Arabidopsis thaliana (NCBI: 3702),101,Li7,10.21958/phenotype:101,"Atwell et. al, Nature 2010","Lithium concentrations in leaves, grown in soil. Elemental analysis was performed with an ICP-MS (PerkinElmer). Sample normalized to calculated weights as described in Baxter et al., 2008",,,,2016-06-27T14:14:01.798000Z,0,TO:0006042,lithium concentration,"""A mineral and ion content related trait (TO:0000465) which is the concentration of lithium (CHEBI:33298) in some plant structure (PO:0009011)."" [GR:Karthik]",May be assayed for per gram fresh weight.,PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,EO:0007269,growth chamber study,"""The treatment involving study type in which plants were grown in growth chambers."" [GR:pj]",,PECO,Plant Environmental Conditions,https://bioportal.bioontology.org/ontologies/PECO,UO:0000051,concentration unit,"""A unit which represents a standard measurement of how much of a given substance there is mixed with another substance."" [UOC:GVG]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),646,LRDpMR0,10.21958/phenotype:646,Salt induced changes in Root System Architecture,EZ-Rhizo - Lateral Root Density per cm of Main Root at 0 mM NaCl,,0,"1/2 MS medium, 1% agar, pH 5.8 with KOH, plants transferred to media containing 0 mM NaCl 4 days after germination. Root architecture scored 4 days after transfer to treatment media.",2019-05-06T12:47:15.836000Z,0,TO:0000043,root morphology trait,"""A plant axis morphology trait (TO:0000738) which is a quality of a root (PO:0025025)."" [GR:pj, PO:0025025, POC:cooperl]",,PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,EO:0001024,vertical agar growth medium,"""An agar growth medium (EO:0001023) involving use of solid growth media in a vertical orientation."" [PO:cooperl]",,PECO,Plant Environmental Conditions,https://bioportal.bioontology.org/ontologies/PECO,UO:0000189,count unit,"""A dimensionless unit which denotes a simple count of things."" [MGED:MGED]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),69,FRI,10.21958/phenotype:69,"Atwell et. al, Nature 2010",RNA was extracted from leaves after 4 wks of growth. FRI gene expression levels were determined by Northern hybridization quantified relative to $Beta;-TUBULIN expression,,,,2016-06-27T14:14:01.633000Z,0,TO:0002616,flowering time trait,"""A plant phenological trait (TO:0000933) which is a quality of the timing of anthesis (flowering stage; PO:0007616)."" [GR:pj, TO:cooperl]","Often influenced by the environment that includes, day light, temperature and geographic location.",PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,EO:0007269,growth chamber study,"""The treatment involving study type in which plants were grown in growth chambers."" [GR:pj]",,PECO,Plant Environmental Conditions,https://bioportal.bioontology.org/ontologies/PECO,UO:0000190,ratio,"""A dimensionless unit which denotes an amount or magnitude of one quantity relative to another."" [Wikipedia:Wikipedia]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),679,TRS125,10.21958/phenotype:679,Salt induced changes in Root System Architecture,EZ-Rhizo - Total Root Size (length) at 125 mM NaCl,,0,"1/2 MS medium, 1% agar, pH 5.8 with KOH, plants transferred to media containing 125 mM NaCl 4 days after germination. Root architecture scored 8 days after transfer to treatment media.",2019-05-06T12:47:15.850000Z,0,TO:0000043,root morphology trait,"""A plant axis morphology trait (TO:0000738) which is a quality of a root (PO:0025025)."" [GR:pj, PO:0025025, POC:cooperl]",,PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,EO:0001024,vertical agar growth medium,"""An agar growth medium (EO:0001023) involving use of solid growth media in a vertical orientation."" [PO:cooperl]",,PECO,Plant Environmental Conditions,https://bioportal.bioontology.org/ontologies/PECO,UO:0000001,length unit,"""A unit which is a standard measure of the distance between two points."" [Wikipedia:Wikipedia]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),115,SizeLocSweden2009,10.21958/phenotype:115,Flowering time in simulated seasons,,,,,2016-07-04T11:16:56.157000Z,0,,,,,,,,,,,,,,,UO:0000186,dimensionless unit,"""A unit which is a standard measure of physical quantity consisting of only a numerical number without any units."" [Wikipedia:Wikipedia]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),114,Yield sweden 2009 (2nd experiment),10.21958/phenotype:114,Flowering time in simulated seasons,Yield was recorded as dry seed weight in grams in Experiment 2 with two replicates under each condition,,,,2016-07-04T11:16:56.152000Z,0,TO:0000181,seed weight,"""A seed morphology trait (TO:0000184) which is the weight of a seed (PO:0009010)."" [GR:pj, ICIS:1058, PO:0009010, TO:moorel]",Seed weight is a component of seed yield (TO:0000905) and seed quality (TO:0000162). Refer to weight (PATO:0000128): A physical quality inhering in a bearer that has mass near a gravitational body.,PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,,,,,,,,UO:0000021,gram,"""A mass unit which is equal to one thousandth of a kilogram or 10^[-3] kg."" [NIST:NIST]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),60,Germ 16,10.21958/phenotype:60,"Atwell et. al, Nature 2010",Days to germination of each accession were recorded daily at each temperature upon first emergence of cotyledons,,,,2016-06-27T14:14:01.575000Z,0,TO:0006061,days to germinate,"""Number of days taken from the day of sowing to the first emergence of cotyledons or hypocotyl."" [GR:curators]",,PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,EO:0007269,growth chamber study,"""The treatment involving study type in which plants were grown in growth chambers."" [GR:pj]",,PECO,Plant Environmental Conditions,https://bioportal.bioontology.org/ontologies/PECO,UO:0000033,day,"""A time unit which is equal to 24 hours."" [Wikipedia:Wikipedia]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),97,avrPphB,10.21958/phenotype:97,"Atwell et. al, Nature 2010","Following inoculation of two leaves per plant with 0.1 ml of 10 -8 cfu/ml bacteria in 10 mM MgSO4 buffer using a blunt-tipped syringe, leaf collapse was scored at 20 hrs and again at 24 hrs after inoculation. A positive score at either time point was deemed a hypersensitive response",,,,2016-06-27T14:14:01.779000Z,0,TO:0000315,bacterial disease resistance,"""The resistance exhibited by a plant or a group of plants (population) in response to the disease caused by a bacterial pathogen infection as compared to the susceptible and/or the reference plants of the same species."" [GR:pj]",It represents the damage done by the diease and/or the pathogen to the plant. The damage is a direct measure of resistance to the particular bacterial strain causing the disease.,PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,EO:0007269,growth chamber study,"""The treatment involving study type in which plants were grown in growth chambers."" [GR:pj]",,PECO,Plant Environmental Conditions,https://bioportal.bioontology.org/ontologies/PECO,UO:0000186,dimensionless unit,"""A unit which is a standard measure of physical quantity consisting of only a numerical number without any units."" [Wikipedia:Wikipedia]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),112,Area sweden 2009 (2nd experiment),10.21958/phenotype:112,Flowering time in simulated seasons,,,,,2016-07-04T11:16:56.142000Z,0,,,,,,,,,,,,,,,UO:0000081,square centimeter,"""An area unit which is equal to one thousand of square meter or 10^[-3] m^[2]."" [NIST:NIST]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),108,Area sweden 2009 (1st experiment),10.21958/phenotype:108,Flowering time in simulated seasons,,,,,2016-07-04T11:16:56.113000Z,0,,,,,,,,,,,,,,,UO:0000081,square centimeter,"""An area unit which is equal to one thousand of square meter or 10^[-3] m^[2]."" [NIST:NIST]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),729,deltaRGR P Zn norm on Zn norm,10.21958/phenotype:729,Root growth rates under nutrient deficiency,individual root growth was measured as the mean of 3 Arabidopsis seedlings. This phenotype is the differences of the normalized root growth rates for seedlings growing under -P and -Zn compared to seedlings only growing under -Zn,,,"Seedlings were grown on MS plates at 22°C in a growth chamber with long day conditions (16h light, 8h dark)",2019-07-16T09:11:48.624000Z,0,TO:0000516,relative root length,"""The relative length of the root determined after a given treatment as compared to the one determined under normal conditions."" [GR:pj]",,PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,EO:0007147,plant growth medium,"""An abiotic plant treatment (EO:0007191) involving the use of a solid or liquid substrate for growing plants or tissue-cultured plant samples."" [GR:pj, PO:cooperl]",,PECO,Plant Environmental Conditions,https://bioportal.bioontology.org/ontologies/PECO,UO:0000190,ratio,"""A dimensionless unit which denotes an amount or magnitude of one quantity relative to another."" [Wikipedia:Wikipedia]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),680,MRL125,10.21958/phenotype:680,Salt induced changes in Root System Architecture,EZ-Rhizo - Main Root Length at 125 mM NaCl,,0,"1/2 MS medium, 1% agar, pH 5.8 with KOH, plants transferred to media containing 75 mM NaCl 4 days after germination. Root architecture scored 8 days after transfer to treatment media.",2019-05-06T12:47:15.850000Z,0,TO:0000043,root morphology trait,"""A plant axis morphology trait (TO:0000738) which is a quality of a root (PO:0025025)."" [GR:pj, PO:0025025, POC:cooperl]",,PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,EO:0001024,vertical agar growth medium,"""An agar growth medium (EO:0001023) involving use of solid growth media in a vertical orientation."" [PO:cooperl]",,PECO,Plant Environmental Conditions,https://bioportal.bioontology.org/ontologies/PECO,UO:0000001,length unit,"""A unit which is a standard measure of the distance between two points."" [Wikipedia:Wikipedia]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),59,Germ 10,10.21958/phenotype:59,"Atwell et. al, Nature 2010",Days to germination of each accession were recorded daily at each temperature upon first emergence of cotyledons,,,,2016-06-27T14:14:01.570000Z,0,TO:0006061,days to germinate,"""Number of days taken from the day of sowing to the first emergence of cotyledons or hypocotyl."" [GR:curators]",,PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,EO:0007269,growth chamber study,"""The treatment involving study type in which plants were grown in growth chambers."" [GR:pj]",,PECO,Plant Environmental Conditions,https://bioportal.bioontology.org/ontologies/PECO,UO:0000033,day,"""A time unit which is equal to 24 hours."" [Wikipedia:Wikipedia]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),754,root length day001,10.21958/phenotype:754,Root growth under Zn deficiency Bouain et al. 2018,Primary root growth has been measured with the Brat software.,,0,"Arabidopsis plants have been grown on plates containing full growth medium in presence of 1% (wt/vol) sucrose and 0.8% (wt/vol) agar, over 7 days starting three days after imbibition.",2019-07-28T11:31:29.566000Z,0,TO:0000227,root length,"""A root morphology trait (TO:0000043) which is the length of one or more roots (PO:0009005)."" [GR:jcl\nGR\:pj, TO:austin_meier\nTO\:cooperl]",refer to PATO:0000122- A 1-D extent quality which is equal to the distance between two points.,PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,EO:0007147,plant growth medium,"""An abiotic plant treatment (EO:0007191) involving the use of a solid or liquid substrate for growing plants or tissue-cultured plant samples."" [GR:pj, PO:cooperl]",,PECO,Plant Environmental Conditions,https://bioportal.bioontology.org/ontologies/PECO,UO:0000241,micron pixel,"""A spatial resolution unit which is equal to a pixel size of one micrometer."" [Wikipedia:Wikipedia]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),737,P-mean Total length day004,10.21958/phenotype:737,Root growth rates under nutrient deficiency,individual root growth was measured as the mean of 3 Arabidopsis seedlings.,,0,"Seedlings were grown on MS plates at 22°C in a growth chamber with long day conditions (16h light, 8h dark)",2019-07-16T09:11:48.628000Z,0,TO:0000227,root length,"""A root morphology trait (TO:0000043) which is the length of one or more roots (PO:0009005)."" [GR:jcl\nGR\:pj, TO:austin_meier\nTO\:cooperl]",refer to PATO:0000122- A 1-D extent quality which is equal to the distance between two points.,PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,EO:0007147,plant growth medium,"""An abiotic plant treatment (EO:0007191) involving the use of a solid or liquid substrate for growing plants or tissue-cultured plant samples."" [GR:pj, PO:cooperl]",,PECO,Plant Environmental Conditions,https://bioportal.bioontology.org/ontologies/PECO,UO:0000241,micron pixel,"""A spatial resolution unit which is equal to a pixel size of one micrometer."" [Wikipedia:Wikipedia]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),65,P31,10.21958/phenotype:65,"Atwell et. al, Nature 2010","Phosphorus concentrations in leaves, grown in soil. Elemental analysis was performed with an ICP-MS (PerkinElmer). Sample normalized to calculated weights as described in Baxter et al., 2008",,,,2016-06-27T14:14:01.614000Z,0,TO:0006045,phosphorus concentration,"""A phosphorus content (TO:0001024) which is the concentration of phosphorus (CHEBI:26082) in some plant structure (PO:0009011)"" [GR:Karthik]",,PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,EO:0007269,growth chamber study,"""The treatment involving study type in which plants were grown in growth chambers."" [GR:pj]",,PECO,Plant Environmental Conditions,https://bioportal.bioontology.org/ontologies/PECO,UO:0000051,concentration unit,"""A unit which represents a standard measurement of how much of a given substance there is mixed with another substance."" [UOC:GVG]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),689,aLRL125,10.21958/phenotype:689,Salt induced changes in Root System Architecture,EZ-Rhizo - average lateral root length at 125 mM NaCl,,0,"1/2 MS medium, 1% agar, pH 5.8 with KOH, plants transferred to media containing 125 mM NaCl 4 days after germination. Root architecture scored 8 days after transfer to treatment media.",2019-05-06T12:47:15.855000Z,0,TO:0000043,root morphology trait,"""A plant axis morphology trait (TO:0000738) which is a quality of a root (PO:0025025)."" [GR:pj, PO:0025025, POC:cooperl]",,PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,EO:0001024,vertical agar growth medium,"""An agar growth medium (EO:0001023) involving use of solid growth media in a vertical orientation."" [PO:cooperl]",,PECO,Plant Environmental Conditions,https://bioportal.bioontology.org/ontologies/PECO,UO:0000001,length unit,"""A unit which is a standard measure of the distance between two points."" [Wikipedia:Wikipedia]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),127,Size spain 2009 (2nd experiment),10.21958/phenotype:127,Flowering time in simulated seasons,,,,,2016-07-04T11:16:56.362000Z,0,,,,,,,,,,,,,,,UO:0000015,centimeter,"""A length unit which is equal to one hundredth of a meter or 10^[-2] m."" [NIST:NIST]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),124,Yield spain 2009 (1st experiment),10.21958/phenotype:124,Flowering time in simulated seasons,Yield was recorded as dry seed weight in grams in Experiment 2 with two replicates under each condition,,,,2016-07-04T11:16:56.349000Z,0,TO:0000181,seed weight,"""A seed morphology trait (TO:0000184) which is the weight of a seed (PO:0009010)."" [GR:pj, ICIS:1058, PO:0009010, TO:moorel]",Seed weight is a component of seed yield (TO:0000905) and seed quality (TO:0000162). Refer to weight (PATO:0000128): A physical quality inhering in a bearer that has mass near a gravitational body.,PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,,,,,,,,UO:0000021,gram,"""A mass unit which is equal to one thousandth of a kilogram or 10^[-3] kg."" [NIST:NIST]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),693,MRLpTRS125,10.21958/phenotype:693,Salt induced changes in Root System Architecture,Ratio between Main Root Length and Total Root Size at 125 mM NaCl,,0,"1/2 MS medium, 1% agar, pH 5.8 with KOH, plants transferred to media containing 125 mM NaCl 4 days after germination. Root architecture scored 8 days after transfer to treatment media.",2019-05-06T12:47:15.856000Z,0,TO:0000043,root morphology trait,"""A plant axis morphology trait (TO:0000738) which is a quality of a root (PO:0025025)."" [GR:pj, PO:0025025, POC:cooperl]",,PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,EO:0001024,vertical agar growth medium,"""An agar growth medium (EO:0001023) involving use of solid growth media in a vertical orientation."" [PO:cooperl]",,PECO,Plant Environmental Conditions,https://bioportal.bioontology.org/ontologies/PECO,UO:0000190,ratio,"""A dimensionless unit which denotes an amount or magnitude of one quantity relative to another."" [Wikipedia:Wikipedia]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),1400,Leaf Ca Mine (μg/g),10.21958/phenotype:1400,Pb Mine soil,"Ca concentrations in leaves, cultivated in Pb-enriched mine soil. Elemental analysis was performed with an ICP-OES (PerkinElmer).",,0,"Seeds of the Arabidopsis thaliana HapMap cohort (360 natural populations) were surface sterilized using 3:10 bleach solution in constant agitation for 10 minutes and rinsed with sterile water six times. Seeds were stratified for 4 days at 4 C in 0.1% agar solution to synchronize germination, then 5 seeds per accession were sown in two soil types with contrasted Pb concentrations into pot trays. The control soil was a mix of commercial potting mix soil with perlite (2:1); the mine soil was a mix of soil from an ancient lead mine (Mina de Can Vergeli; 41°53'42.4""N 3°01'11.7""E), commercial potting mix soil and perlite (2:1:1). Trays were placed in a growth chamber with 150 mmol/m2s of light intensity, 12h light/12h dark photoperiod, and 25 ºC /20 ºC day/night temperature. Trays were bottom-watered twice weekly with deionized water. Fifty-day old plants were harvested to measure its nutrient mineral contents. Fifty-day old plants were harvested to measure its nutrient mineral contents.",2021-07-02T08:52:48.139819Z,0,TO:0006047,calcium concentration,"""A mineral and ion content related trait (TO:0000465) which is the concentration of calcium (CHEBI:22985) in some plant structure (PO:0009011)."" [GR:Karthik]",,PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,EO:0007248,green house study,"""The treatment where the plants were grown under green house conditions. This may involve supplemental treatments in addition to any standard conditions."" [GR:pj]",,PECO,Plant Environmental Conditions,https://bioportal.bioontology.org/ontologies/PECO,UO:0000023,microgram,"""A mass unit which is equal to one millionth of a gram or 10^[-6] g."" [UOC:GVG]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),98,Fe56,10.21958/phenotype:98,"Atwell et. al, Nature 2010","Iron concentrations in leaves, grown in soil. Elemental analysis was performed with an ICP-MS (PerkinElmer). Sample normalized to calculated weights as described in Baxter et al., 2008",,,,2016-06-27T14:14:01.783000Z,0,TO:0006049,iron concentration,"""An iron content (TO:0020089) which is the concentration of iron (CHEBI:24873) in some plant structure (PO:0009011)"" [GR:Karthik]",,PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,EO:0007269,growth chamber study,"""The treatment involving study type in which plants were grown in growth chambers."" [GR:pj]",,PECO,Plant Environmental Conditions,https://bioportal.bioontology.org/ontologies/PECO,UO:0000051,concentration unit,"""A unit which represents a standard measurement of how much of a given substance there is mixed with another substance."" [UOC:GVG]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),744,PZ-mean Total length day005,10.21958/phenotype:744,Root growth rates under nutrient deficiency,individual root growth was measured as the mean of 3 Arabidopsis seedlings.,,0,"Seedlings were grown on MS plates at 22°C in a growth chamber with long day conditions (16h light, 8h dark)",2019-07-16T09:11:48.632000Z,0,TO:0000227,root length,"""A root morphology trait (TO:0000043) which is the length of one or more roots (PO:0009005)."" [GR:jcl\nGR\:pj, TO:austin_meier\nTO\:cooperl]",refer to PATO:0000122- A 1-D extent quality which is equal to the distance between two points.,PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,EO:0007147,plant growth medium,"""An abiotic plant treatment (EO:0007191) involving the use of a solid or liquid substrate for growing plants or tissue-cultured plant samples."" [GR:pj, PO:cooperl]",,PECO,Plant Environmental Conditions,https://bioportal.bioontology.org/ontologies/PECO,UO:0000241,micron pixel,"""A spatial resolution unit which is equal to a pixel size of one micrometer."" [Wikipedia:Wikipedia]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),682,Depth125,10.21958/phenotype:682,Salt induced changes in Root System Architecture,EZ-Rhizo - Main Root Depth - a vertical line from the top-most to bottom-most point of the main root - at 125 mM NaCl,,0,"1/2 MS medium, 1% agar, pH 5.8 with KOH, plants transferred to media containing 125 mM NaCl 4 days after germination. Root architecture scored 8 days after transfer to treatment media.",2019-05-06T12:47:15.851000Z,0,TO:0000043,root morphology trait,"""A plant axis morphology trait (TO:0000738) which is a quality of a root (PO:0025025)."" [GR:pj, PO:0025025, POC:cooperl]",,PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,EO:0001024,vertical agar growth medium,"""An agar growth medium (EO:0001023) involving use of solid growth media in a vertical orientation."" [PO:cooperl]",,PECO,Plant Environmental Conditions,https://bioportal.bioontology.org/ontologies/PECO,UO:0000001,length unit,"""A unit which is a standard measure of the distance between two points."" [Wikipedia:Wikipedia]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),674,LRLpMRL75,10.21958/phenotype:674,Salt induced changes in Root System Architecture,Ratio of Lateral Root Length (cummulative) and Main Root Length at 75 mM NaCl,,0,"1/2 MS medium, 1% agar, pH 5.8 with KOH, plants transferred to media containing 75 mM NaCl 4 days after germination. Root architecture scored 8 days after transfer to treatment media.",2019-05-06T12:47:15.848000Z,0,TO:0000043,root morphology trait,"""A plant axis morphology trait (TO:0000738) which is a quality of a root (PO:0025025)."" [GR:pj, PO:0025025, POC:cooperl]",,PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,EO:0001024,vertical agar growth medium,"""An agar growth medium (EO:0001023) involving use of solid growth media in a vertical orientation."" [PO:cooperl]",,PECO,Plant Environmental Conditions,https://bioportal.bioontology.org/ontologies/PECO,UO:0000190,ratio,"""A dimensionless unit which denotes an amount or magnitude of one quantity relative to another."" [Wikipedia:Wikipedia]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),44,Hypocotyl length,10.21958/phenotype:44,"Atwell et. al, Nature 2010","After seven days growth under the photocycle and thermocycle treatment,plants were flattened directly on the agar and imaged on a flatbed scanner. Hypocotyl lengths were determined using NIH Image",,,,2016-06-27T14:14:01.500000Z,0,TO:0006065,seedling hypocotyl length,"""A seedling hypocotyl morphology trait (TO:0000769) which is the length of a seedling hypocotyl (PO:0025291)."" [GR:Karthik, PO:0025291, POC:cooperl]",,PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,EO:0007269,growth chamber study,"""The treatment involving study type in which plants were grown in growth chambers."" [GR:pj]",,PECO,Plant Environmental Conditions,https://bioportal.bioontology.org/ontologies/PECO,UO:0000015,centimeter,"""A length unit which is equal to one hundredth of a meter or 10^[-2] m."" [NIST:NIST]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),11,2W,10.21958/phenotype:11,"Atwell et. al, Nature 2010",Number of days required for the bolt height to reach 5cm,,,,2016-06-27T14:14:00.761000Z,0,TO:0000344,days to flowering trait,"""A flowering time trait (TO:0002616)which is the number of days required for an individual flower (PO:0009046), a whole plant (PO:0000003) or a plant population to reach flowering stage (PO:0007616) from a predetermined time point (e.g. the date of seed sowing, seedling transplant, or seedling emergence)."" [GR:pj, TO:cooperl]","Often determinded by either pollen shedding, exsertion of the anthers or simply opening of the flower.",PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,EO:0007269,growth chamber study,"""The treatment involving study type in which plants were grown in growth chambers."" [GR:pj]",,PECO,Plant Environmental Conditions,https://bioportal.bioontology.org/ontologies/PECO,UO:0000033,day,"""A time unit which is equal to 24 hours."" [Wikipedia:Wikipedia]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),82,0W GH LN,10.21958/phenotype:82,"Atwell et. al, Nature 2010",Leaf number was scored as the number of rosette leaves and the number of cauline leaves when the bolt reached 5cm,,,,2016-06-27T14:14:01.696000Z,0,TO:0000241,leaf number,"""A shoot system morphology trait (TO:0000077) which is the number of leaves (PO:0025034) in a shoot system (PO:0009006) of a plant."" [GR:pj, TO:cooperl]",,PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,EO:0007269,growth chamber study,"""The treatment involving study type in which plants were grown in growth chambers."" [GR:pj]",,PECO,Plant Environmental Conditions,https://bioportal.bioontology.org/ontologies/PECO,UO:0000189,count unit,"""A dimensionless unit which denotes a simple count of things."" [MGED:MGED]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),1398,Leaf Cu Mine (μg/g),10.21958/phenotype:1398,Pb Mine soil,"Cu concentrations in leaves, cultivated in Pb-enriched mine soil. Elemental analysis was performed with an ICP-OES (PerkinElmer).",,0,"Seeds of the Arabidopsis thaliana HapMap cohort (360 natural populations) were surface sterilized using 3:10 bleach solution in constant agitation for 10 minutes and rinsed with sterile water six times. Seeds were stratified for 4 days at 4 C in 0.1% agar solution to synchronize germination, then 5 seeds per accession were sown in two soil types with contrasted Pb concentrations into pot trays. The control soil was a mix of commercial potting mix soil with perlite (2:1); the mine soil was a mix of soil from an ancient lead mine (Mina de Can Vergeli; 41°53'42.4""N 3°01'11.7""E), commercial potting mix soil and perlite (2:1:1). Trays were placed in a growth chamber with 150 mmol/m2s of light intensity, 12h light/12h dark photoperiod, and 25 ºC /20 ºC day/night temperature. Trays were bottom-watered twice weekly with deionized water. Fifty-day old plants were harvested to measure its nutrient mineral contents.",2021-07-02T08:52:48.138509Z,0,TO:0006052,copper concentration,"""A copper content (TO:0020092) which is the concentration of copper (CHEBI:23377) in some plant structure (PO:0009011)"" [GR:Karthik]",,PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,EO:0007248,green house study,"""The treatment where the plants were grown under green house conditions. This may involve supplemental treatments in addition to any standard conditions."" [GR:pj]",,PECO,Plant Environmental Conditions,https://bioportal.bioontology.org/ontologies/PECO,UO:0000023,microgram,"""A mass unit which is equal to one millionth of a gram or 10^[-6] g."" [UOC:GVG]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),763,root length day003 minusZn,10.21958/phenotype:763,Root growth under Zn deficiency Bouain et al. 2018,Primary root growth has been measured with the Brat software.,,0,"Arabidopsis plants have been grown on plates containing zinc deficiency (-Zn) medium in presence of 1% (wt/vol) sucrose and 0.8% (wt/vol) agar, over 7 days starting three days after imbibition.",2019-07-28T11:31:29.574000Z,0,TO:0000227,root length,"""A root morphology trait (TO:0000043) which is the length of one or more roots (PO:0009005)."" [GR:jcl\nGR\:pj, TO:austin_meier\nTO\:cooperl]",refer to PATO:0000122- A 1-D extent quality which is equal to the distance between two points.,PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,EO:0007147,plant growth medium,"""An abiotic plant treatment (EO:0007191) involving the use of a solid or liquid substrate for growing plants or tissue-cultured plant samples."" [GR:pj, PO:cooperl]",,PECO,Plant Environmental Conditions,https://bioportal.bioontology.org/ontologies/PECO,UO:0000241,micron pixel,"""A spatial resolution unit which is equal to a pixel size of one micrometer."" [Wikipedia:Wikipedia]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),659,TRS75,10.21958/phenotype:659,Salt induced changes in Root System Architecture,EZ-Rhizo - Total Root Size (length) at 75 mM NaCl,,0,"1/2 MS medium, 1% agar, pH 5.8 with KOH, plants transferred to media containing 75 mM NaCl 4 days after germination. Root architecture scored 8 days after transfer to treatment media.",2019-05-06T12:47:15.842000Z,0,TO:0000043,root morphology trait,"""A plant axis morphology trait (TO:0000738) which is a quality of a root (PO:0025025)."" [GR:pj, PO:0025025, POC:cooperl]",,PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,EO:0001024,vertical agar growth medium,"""An agar growth medium (EO:0001023) involving use of solid growth media in a vertical orientation."" [PO:cooperl]",,PECO,Plant Environmental Conditions,https://bioportal.bioontology.org/ontologies/PECO,UO:0000001,length unit,"""A unit which is a standard measure of the distance between two points."" [Wikipedia:Wikipedia]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),119,DTF spain 2009 (1st experiment),10.21958/phenotype:119,Flowering time in simulated seasons,,,,,2016-07-04T11:16:56.177000Z,0,TO:0000344,days to flowering trait,"""A flowering time trait (TO:0002616)which is the number of days required for an individual flower (PO:0009046), a whole plant (PO:0000003) or a plant population to reach flowering stage (PO:0007616) from a predetermined time point (e.g. the date of seed sowing, seedling transplant, or seedling emergence)."" [GR:pj, TO:cooperl]","Often determinded by either pollen shedding, exsertion of the anthers or simply opening of the flower.",PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,,,,,,,,UO:0000033,day,"""A time unit which is equal to 24 hours."" [Wikipedia:Wikipedia]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),286,Mo98,10.21958/phenotype:286,Ion Concentration,Molybdenum concentrations in leaves,,,,2017-03-21T12:58:51.201000Z,0,TO:0006056,molybdenum concentration,"""A mineral and ion content related trait (TO:0000465) which is the concentration of molybdenum (CHEBI:25370) in some plant structure (PO:0009011)."" [GR:Karthik]",,PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,EO:0007269,growth chamber study,"""The treatment involving study type in which plants were grown in growth chambers."" [GR:pj]",,PECO,Plant Environmental Conditions,https://bioportal.bioontology.org/ontologies/PECO,UO:0000051,concentration unit,"""A unit which represents a standard measurement of how much of a given substance there is mixed with another substance."" [UOC:GVG]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,6
Arabidopsis thaliana (NCBI: 3702),739,PF-mean Total length day003,10.21958/phenotype:739,Root growth rates under nutrient deficiency,individual root growth was measured as the mean of 3 Arabidopsis seedlings.,,0,"Seedlings were grown on MS plates at 22°C in a growth chamber with long day conditions (16h light, 8h dark)",2019-07-16T09:11:48.629000Z,0,TO:0000227,root length,"""A root morphology trait (TO:0000043) which is the length of one or more roots (PO:0009005)."" [GR:jcl\nGR\:pj, TO:austin_meier\nTO\:cooperl]",refer to PATO:0000122- A 1-D extent quality which is equal to the distance between two points.,PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,EO:0007147,plant growth medium,"""An abiotic plant treatment (EO:0007191) involving the use of a solid or liquid substrate for growing plants or tissue-cultured plant samples."" [GR:pj, PO:cooperl]",,PECO,Plant Environmental Conditions,https://bioportal.bioontology.org/ontologies/PECO,UO:0000241,micron pixel,"""A spatial resolution unit which is equal to a pixel size of one micrometer."" [Wikipedia:Wikipedia]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),676,PC1sc75,10.21958/phenotype:676,Salt induced changes in Root System Architecture,1st Principal Component - pulled using all RSA traits with prior scaling at 75 mM NaCl,,0,"1/2 MS medium, 1% agar, pH 5.8 with KOH, plants transferred to media containing 75 mM NaCl 4 days after germination. Root architecture scored 8 days after transfer to treatment media.",2019-05-06T12:47:15.849000Z,0,TO:0000043,root morphology trait,"""A plant axis morphology trait (TO:0000738) which is a quality of a root (PO:0025025)."" [GR:pj, PO:0025025, POC:cooperl]",,PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,EO:0001024,vertical agar growth medium,"""An agar growth medium (EO:0001023) involving use of solid growth media in a vertical orientation."" [PO:cooperl]",,PECO,Plant Environmental Conditions,https://bioportal.bioontology.org/ontologies/PECO,UO:0000186,dimensionless unit,"""A unit which is a standard measure of physical quantity consisting of only a numerical number without any units."" [Wikipedia:Wikipedia]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),279,Co59,10.21958/phenotype:279,Ion Concentration,Cobalt concentrations in leaves,,,,2017-03-21T12:58:51.188000Z,0,TO:0006050,cobalt concentration,"""A mineral and ion content related trait (TO:0000465) which is the concentration of cobalt (CHEBI:33888) in some plant structure (PO:0009011)."" [GR:Karthik]",,PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,EO:0007269,growth chamber study,"""The treatment involving study type in which plants were grown in growth chambers."" [GR:pj]",,PECO,Plant Environmental Conditions,https://bioportal.bioontology.org/ontologies/PECO,UO:0000051,concentration unit,"""A unit which represents a standard measurement of how much of a given substance there is mixed with another substance."" [UOC:GVG]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,5
Arabidopsis thaliana (NCBI: 3702),1396,Leaf Fe Mine (μg/g),10.21958/phenotype:1396,Pb Mine soil,"Fe concentrations in leaves, cultivated in Pb-enriched mine soil. Elemental analysis was performed with an ICP-OES (PerkinElmer).",,0,"Seeds of the Arabidopsis thaliana HapMap cohort (360 natural populations) were surface sterilized using 3:10 bleach solution in constant agitation for 10 minutes and rinsed with sterile water six times. Seeds were stratified for 4 days at 4 C in 0.1% agar solution to synchronize germination, then 5 seeds per accession were sown in two soil types with contrasted Pb concentrations into pot trays. The control soil was a mix of commercial potting mix soil with perlite (2:1); the mine soil was a mix of soil from an ancient lead mine (Mina de Can Vergeli; 41°53'42.4""N 3°01'11.7""E), commercial potting mix soil and perlite (2:1:1). Trays were placed in a growth chamber with 150 mmol/m2s of light intensity, 12h light/12h dark photoperiod, and 25 ºC /20 ºC day/night temperature. Trays were bottom-watered twice weekly with deionized water. Fifty-day old plants were harvested to measure its nutrient mineral contents.",2021-07-02T08:52:48.137205Z,0,TO:0006049,iron concentration,"""An iron content (TO:0020089) which is the concentration of iron (CHEBI:24873) in some plant structure (PO:0009011)"" [GR:Karthik]",,PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,EO:0007248,green house study,"""The treatment where the plants were grown under green house conditions. This may involve supplemental treatments in addition to any standard conditions."" [GR:pj]",,PECO,Plant Environmental Conditions,https://bioportal.bioontology.org/ontologies/PECO,UO:0000023,microgram,"""A mass unit which is equal to one millionth of a gram or 10^[-6] g."" [UOC:GVG]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),9,Leaf roll 10,10.21958/phenotype:9,"Atwell et. al, Nature 2010","Results expressed as binary data, determined by the presence (1) or absence (0) of rolled leaves in all 4 plants / accession at 8 weeks growth",,,,2016-06-27T14:14:00.750000Z,0,TO:0006063,leaf margin serrated,"""A leaf margin morphology trait (TO:0002635) which is a notched or grooved leaf margin (PO:0020128)."" [GR:curators, PO:0020128, POC:cooperl]",Refer to serrated (PATO:0001206): A shape quality inhering in a bearer by virtue of having sharp straight-edged teeth pointing to the apex.,PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,EO:0007269,growth chamber study,"""The treatment involving study type in which plants were grown in growth chambers."" [GR:pj]",,PECO,Plant Environmental Conditions,https://bioportal.bioontology.org/ontologies/PECO,UO:0000186,dimensionless unit,"""A unit which is a standard measure of physical quantity consisting of only a numerical number without any units."" [Wikipedia:Wikipedia]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),685,noLRpMR125,10.21958/phenotype:685,Salt induced changes in Root System Architecture,EZ-Rhizo - number of lateral roots per main root at 125 mM NaCl,,0,"1/2 MS medium, 1% agar, pH 5.8 with KOH, plants transferred to media containing 125 mM NaCl 4 days after germination. Root architecture scored 8 days after transfer to treatment media.",2019-05-06T12:47:15.853000Z,0,TO:0000043,root morphology trait,"""A plant axis morphology trait (TO:0000738) which is a quality of a root (PO:0025025)."" [GR:pj, PO:0025025, POC:cooperl]",,PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,EO:0001024,vertical agar growth medium,"""An agar growth medium (EO:0001023) involving use of solid growth media in a vertical orientation."" [PO:cooperl]",,PECO,Plant Environmental Conditions,https://bioportal.bioontology.org/ontologies/PECO,UO:0000189,count unit,"""A dimensionless unit which denotes a simple count of things."" [MGED:MGED]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),741,PF-mean Total length day005,10.21958/phenotype:741,Root growth rates under nutrient deficiency,individual root growth was measured as the mean of 3 Arabidopsis seedlings.,,0,"Seedlings were grown on MS plates at 22°C in a growth chamber with long day conditions (16h light, 8h dark)",2019-07-16T09:11:48.630000Z,0,TO:0000227,root length,"""A root morphology trait (TO:0000043) which is the length of one or more roots (PO:0009005)."" [GR:jcl\nGR\:pj, TO:austin_meier\nTO\:cooperl]",refer to PATO:0000122- A 1-D extent quality which is equal to the distance between two points.,PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,EO:0007147,plant growth medium,"""An abiotic plant treatment (EO:0007191) involving the use of a solid or liquid substrate for growing plants or tissue-cultured plant samples."" [GR:pj, PO:cooperl]",,PECO,Plant Environmental Conditions,https://bioportal.bioontology.org/ontologies/PECO,UO:0000241,micron pixel,"""A spatial resolution unit which is equal to a pixel size of one micrometer."" [Wikipedia:Wikipedia]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),664,Straight75,10.21958/phenotype:664,Salt induced changes in Root System Architecture,EZ-Rhizo - main root straightness expressed as ratio between main root vector length (straight) and the main root path length (observed) at 75 mM NaCl,,0,"1/2 MS medium, 1% agar, pH 5.8 with KOH, plants transferred to media containing 75 mM NaCl 4 days after germination. Root architecture scored 8 days after transfer to treatment media.",2019-05-06T12:47:15.844000Z,0,TO:0000043,root morphology trait,"""A plant axis morphology trait (TO:0000738) which is a quality of a root (PO:0025025)."" [GR:pj, PO:0025025, POC:cooperl]",,PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,EO:0001024,vertical agar growth medium,"""An agar growth medium (EO:0001023) involving use of solid growth media in a vertical orientation."" [PO:cooperl]",,PECO,Plant Environmental Conditions,https://bioportal.bioontology.org/ontologies/PECO,UO:0000190,ratio,"""A dimensionless unit which denotes an amount or magnitude of one quantity relative to another."" [Wikipedia:Wikipedia]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),736,P-mean Total length day003,10.21958/phenotype:736,Root growth rates under nutrient deficiency,individual root growth was measured as the mean of 3 Arabidopsis seedlings.,,0,"Seedlings were grown on MS plates at 22°C in a growth chamber with long day conditions (16h light, 8h dark)",2019-07-16T09:11:48.628000Z,0,TO:0000227,root length,"""A root morphology trait (TO:0000043) which is the length of one or more roots (PO:0009005)."" [GR:jcl\nGR\:pj, TO:austin_meier\nTO\:cooperl]",refer to PATO:0000122- A 1-D extent quality which is equal to the distance between two points.,PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,EO:0007147,plant growth medium,"""An abiotic plant treatment (EO:0007191) involving the use of a solid or liquid substrate for growing plants or tissue-cultured plant samples."" [GR:pj, PO:cooperl]",,PECO,Plant Environmental Conditions,https://bioportal.bioontology.org/ontologies/PECO,UO:0000241,micron pixel,"""A spatial resolution unit which is equal to a pixel size of one micrometer."" [Wikipedia:Wikipedia]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),79,Silique 16,10.21958/phenotype:79,"Atwell et. al, Nature 2010",The length of 5 siliques was measured for each accession after growth had concluded,,,,2016-06-27T14:14:01.682000Z,0,TO:0002626,fruit length,"""A fruit morphology trait (TO:0002629) which is the length of a fruit (PO:0009001)."" [GR:pj, PO:0009001, TO:moorel]",Refer to length (PATO:0000122): A 1-D extent quality which is equal to the distance between two points.,PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,EO:0007269,growth chamber study,"""The treatment involving study type in which plants were grown in growth chambers."" [GR:pj]",,PECO,Plant Environmental Conditions,https://bioportal.bioontology.org/ontologies/PECO,UO:0000015,centimeter,"""A length unit which is equal to one hundredth of a meter or 10^[-2] m."" [NIST:NIST]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),26,Width 22,10.21958/phenotype:26,"Atwell et. al, Nature 2010",The diameters of 4 plants of each accession were measured and the results were expressed as an average value across all available replicates.Plants were scored 5 weeks post germination,,,,2016-06-27T14:14:01.096000Z,0,TO:0006062,plant width,"""The average width of a plant measured across an axis such as the main stem/stalk."" [GR:pj]",,PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,EO:0007269,growth chamber study,"""The treatment involving study type in which plants were grown in growth chambers."" [GR:pj]",,PECO,Plant Environmental Conditions,https://bioportal.bioontology.org/ontologies/PECO,UO:0000015,centimeter,"""A length unit which is equal to one hundredth of a meter or 10^[-2] m."" [NIST:NIST]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),85,LN10,10.21958/phenotype:85,"Atwell et. al, Nature 2010","Plants were checked bi-weekly for presence of first buds, and the average leaf number at flowering time of 4 plants of the same accession were collected",,,,2016-06-27T14:14:01.710000Z,0,TO:0000241,leaf number,"""A shoot system morphology trait (TO:0000077) which is the number of leaves (PO:0025034) in a shoot system (PO:0009006) of a plant."" [GR:pj, TO:cooperl]",,PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,EO:0007269,growth chamber study,"""The treatment involving study type in which plants were grown in growth chambers."" [GR:pj]",,PECO,Plant Environmental Conditions,https://bioportal.bioontology.org/ontologies/PECO,UO:0000189,count unit,"""A dimensionless unit which denotes a simple count of things."" [MGED:MGED]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),678,PC3sc75,10.21958/phenotype:678,Salt induced changes in Root System Architecture,3rd Principal Component - pulled using all RSA traits with prior scaling at 75 mM NaCl,,0,"1/2 MS medium, 1% agar, pH 5.8 with KOH, plants transferred to media containing 75 mM NaCl 4 days after germination. Root architecture scored 8 days after transfer to treatment media.",2019-05-06T12:47:15.849000Z,0,TO:0000043,root morphology trait,"""A plant axis morphology trait (TO:0000738) which is a quality of a root (PO:0025025)."" [GR:pj, PO:0025025, POC:cooperl]",,PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,EO:0001024,vertical agar growth medium,"""An agar growth medium (EO:0001023) involving use of solid growth media in a vertical orientation."" [PO:cooperl]",,PECO,Plant Environmental Conditions,https://bioportal.bioontology.org/ontologies/PECO,UO:0000186,dimensionless unit,"""A unit which is a standard measure of physical quantity consisting of only a numerical number without any units."" [Wikipedia:Wikipedia]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),72,Vern Growth,10.21958/phenotype:72,"Atwell et. al, Nature 2010",Vegetative growth rate during vernalization was estimated as the increment of cm2 leaf area per day between each of the three time points for which leaf area was measured,,,,2016-06-27T14:14:01.647000Z,0,TO:0000515,relative growth rate,"""The relative growth of the plant determined after a given treatment as compared to the one determined under normal conditions."" [GR:pj]",,PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,EO:0007269,growth chamber study,"""The treatment involving study type in which plants were grown in growth chambers."" [GR:pj]",,PECO,Plant Environmental Conditions,https://bioportal.bioontology.org/ontologies/PECO,UO:0000187,percent,"""A dimensionless ratio unit which denotes numbers as fractions of 100."" [Wikipedia:Wikipedia]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),281,Cu65,10.21958/phenotype:281,Ion Concentration,Copper concentrations in leaves,,,,2017-03-21T12:58:51.190000Z,0,TO:0006052,copper concentration,"""A copper content (TO:0020092) which is the concentration of copper (CHEBI:23377) in some plant structure (PO:0009011)"" [GR:Karthik]",,PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,EO:0007269,growth chamber study,"""The treatment involving study type in which plants were grown in growth chambers."" [GR:pj]",,PECO,Plant Environmental Conditions,https://bioportal.bioontology.org/ontologies/PECO,UO:0000051,concentration unit,"""A unit which represents a standard measurement of how much of a given substance there is mixed with another substance."" [UOC:GVG]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,6
Arabidopsis thaliana (NCBI: 3702),95,Mn55,10.21958/phenotype:95,"Atwell et. al, Nature 2010","Manganese concentrations in leaves, grown in soil. Elemental analysis was performed with an ICP-MS (PerkinElmer). Sample normalized to calculated weights as described in Baxter et al., 2008",,,,2016-06-27T14:14:01.769000Z,0,TO:0006048,manganese concentration,"""A manganese content (TO:0020091) which is the concentration of manganese (CHEBI:25154) in some plant structure (PO:0009011)"" [GR:Karthik]",,PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,EO:0007269,growth chamber study,"""The treatment involving study type in which plants were grown in growth chambers."" [GR:pj]",,PECO,Plant Environmental Conditions,https://bioportal.bioontology.org/ontologies/PECO,UO:0000051,concentration unit,"""A unit which represents a standard measurement of how much of a given substance there is mixed with another substance."" [UOC:GVG]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),687,LRDpBZ125,10.21958/phenotype:687,Salt induced changes in Root System Architecture,EZ-Rhizo - Lateral Root Density per cm of Branching Zone at 125 mM NaCl,,0,"1/2 MS medium, 1% agar, pH 5.8 with KOH, plants transferred to media containing 75 mM NaCl 4 days after germination. Root architecture scored 8 days after transfer to treatment media.",2019-05-06T12:47:15.854000Z,0,TO:0000043,root morphology trait,"""A plant axis morphology trait (TO:0000738) which is a quality of a root (PO:0025025)."" [GR:pj, PO:0025025, POC:cooperl]",,PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,EO:0001024,vertical agar growth medium,"""An agar growth medium (EO:0001023) involving use of solid growth media in a vertical orientation."" [PO:cooperl]",,PECO,Plant Environmental Conditions,https://bioportal.bioontology.org/ontologies/PECO,UO:0000189,count unit,"""A dimensionless unit which denotes a simple count of things."" [MGED:MGED]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),1390,Estimated Soil Pb,10.21958/phenotype:1390,Pb Mine soil,,,,,2021-07-02T08:52:48.133278Z,0,,,,,,,,,,,,,,,,,,,,,,1
Arabidopsis thaliana (NCBI: 3702),642,Depth0,10.21958/phenotype:642,Salt induced changes in Root System Architecture,EZ-Rhizo - Main Root Depth - a vertical line from the top-most to bottom-most point of the main root - at 0 mM NaCl,,0,"1/2 MS medium, 1% agar, pH 5.8 with KOH, plants transferred to media containing 0 mM NaCl 4 days after germination. Root architecture scored 4 days after transfer to treatment media.",2019-05-06T12:47:15.834000Z,0,TO:0000043,root morphology trait,"""A plant axis morphology trait (TO:0000738) which is a quality of a root (PO:0025025)."" [GR:pj, PO:0025025, POC:cooperl]",,PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,EO:0001024,vertical agar growth medium,"""An agar growth medium (EO:0001023) involving use of solid growth media in a vertical orientation."" [PO:cooperl]",,PECO,Plant Environmental Conditions,https://bioportal.bioontology.org/ontologies/PECO,UO:0000001,length unit,"""A unit which is a standard measure of the distance between two points."" [Wikipedia:Wikipedia]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),77,Trichome avg JA,10.21958/phenotype:77,"Atwell et. al, Nature 2010",Measurements were collected from leaf disks removed from the 11th leaf of plants that had been treated with 0.6 ml of a 0.45mM solution of jasmonic acid (Sigma J-2500) in water (JA). Trichome density was calculated as the trichome number per disk divided by the disk area,,,,2016-06-27T14:14:01.671000Z,0,TO:0006066,leaf trichome density,"""Measurement of trichomes found in per unit area of a leaf."" [GR:curators]",,PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,EO:0007269,growth chamber study,"""The treatment involving study type in which plants were grown in growth chambers."" [GR:pj]",,PECO,Plant Environmental Conditions,https://bioportal.bioontology.org/ontologies/PECO,UO:0000189,count unit,"""A dimensionless unit which denotes a simple count of things."" [MGED:MGED]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),30,FT16,10.21958/phenotype:30,"Atwell et. al, Nature 2010","Plants were checked bi-weekly for presence of first buds, and the average flowering time of 4 plants of the same accession were collected",,,,2016-06-27T14:14:01.431000Z,0,TO:0000344,days to flowering trait,"""A flowering time trait (TO:0002616)which is the number of days required for an individual flower (PO:0009046), a whole plant (PO:0000003) or a plant population to reach flowering stage (PO:0007616) from a predetermined time point (e.g. the date of seed sowing, seedling transplant, or seedling emergence)."" [GR:pj, TO:cooperl]","Often determinded by either pollen shedding, exsertion of the anthers or simply opening of the flower.",PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,EO:0007269,growth chamber study,"""The treatment involving study type in which plants were grown in growth chambers."" [GR:pj]",,PECO,Plant Environmental Conditions,https://bioportal.bioontology.org/ontologies/PECO,UO:0000033,day,"""A time unit which is equal to 24 hours."" [Wikipedia:Wikipedia]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),21,As2 CFU2,10.21958/phenotype:21,"Atwell et. al, Nature 2010",,,,,2016-06-27T14:14:00.810000Z,0,TO:0000315,bacterial disease resistance,"""The resistance exhibited by a plant or a group of plants (population) in response to the disease caused by a bacterial pathogen infection as compared to the susceptible and/or the reference plants of the same species."" [GR:pj]",It represents the damage done by the diease and/or the pathogen to the plant. The damage is a direct measure of resistance to the particular bacterial strain causing the disease.,PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,EO:0007269,growth chamber study,"""The treatment involving study type in which plants were grown in growth chambers."" [GR:pj]",,PECO,Plant Environmental Conditions,https://bioportal.bioontology.org/ontologies/PECO,UO:0000210,colony forming unit,"""A dimensionless count unit which a measure of viable bacterial numbers."" [Wikipedia:Wikipedia]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),725,RGR P Zn norm,10.21958/phenotype:725,Root growth rates under nutrient deficiency,individual root growth was measured as the mean of 3 Arabidopsis seedlings between day 4 and 6 on MS plates. This phenotype is the normalized root growth rates (compared to growth on MS) for seedlings growing under -P and -Zn.,,0,"Seedlings were grown on MS plates at 22°C in a growth chamber with long day conditions (16h light, 8h dark)",2019-07-16T09:11:48.622000Z,0,TO:0000516,relative root length,"""The relative length of the root determined after a given treatment as compared to the one determined under normal conditions."" [GR:pj]",,PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,EO:0007147,plant growth medium,"""An abiotic plant treatment (EO:0007191) involving the use of a solid or liquid substrate for growing plants or tissue-cultured plant samples."" [GR:pj, PO:cooperl]",,PECO,Plant Environmental Conditions,https://bioportal.bioontology.org/ontologies/PECO,UO:0000190,ratio,"""A dimensionless unit which denotes an amount or magnitude of one quantity relative to another."" [Wikipedia:Wikipedia]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),131,SizeMainEffect2009,10.21958/phenotype:131,Flowering time in simulated seasons,,,,,2016-07-04T11:16:56.380000Z,0,,,,,,,,,,,,,,,UO:0000186,dimensionless unit,"""A unit which is a standard measure of physical quantity consisting of only a numerical number without any units."" [Wikipedia:Wikipedia]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),3,Leaf serr 16,10.21958/phenotype:3,"Atwell et. al, Nature 2010",Average severity of serration across 4 plants was scored between 0 (entire lamina) and 1.5 (jagged serration) after 5 weeks of growth,,,,2016-06-27T14:14:00.623000Z,0,TO:0006063,leaf margin serrated,"""A leaf margin morphology trait (TO:0002635) which is a notched or grooved leaf margin (PO:0020128)."" [GR:curators, PO:0020128, POC:cooperl]",Refer to serrated (PATO:0001206): A shape quality inhering in a bearer by virtue of having sharp straight-edged teeth pointing to the apex.,PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,EO:0007269,growth chamber study,"""The treatment involving study type in which plants were grown in growth chambers."" [GR:pj]",,PECO,Plant Environmental Conditions,https://bioportal.bioontology.org/ontologies/PECO,UO:0000186,dimensionless unit,"""A unit which is a standard measure of physical quantity consisting of only a numerical number without any units."" [Wikipedia:Wikipedia]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),17,avrRpm1,10.21958/phenotype:17,"Atwell et. al, Nature 2010","Following inoculation of two leaves per plant with 0.1 ml of 10 -8 cfu/ml bacteria in 10 mM MgSO4 buffer using a blunt-tipped syringe, leaf collapse was scored at 20 hrs and again at 24 hrs after inoculation. A positive score at either time point was deemed a hypersensitive response",,,,2016-06-27T14:14:00.791000Z,0,TO:0000315,bacterial disease resistance,"""The resistance exhibited by a plant or a group of plants (population) in response to the disease caused by a bacterial pathogen infection as compared to the susceptible and/or the reference plants of the same species."" [GR:pj]",It represents the damage done by the diease and/or the pathogen to the plant. The damage is a direct measure of resistance to the particular bacterial strain causing the disease.,PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,EO:0007269,growth chamber study,"""The treatment involving study type in which plants were grown in growth chambers."" [GR:pj]",,PECO,Plant Environmental Conditions,https://bioportal.bioontology.org/ontologies/PECO,UO:0000186,dimensionless unit,"""A unit which is a standard measure of physical quantity consisting of only a numerical number without any units."" [Wikipedia:Wikipedia]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),37,0W,10.21958/phenotype:37,"Atwell et. al, Nature 2010",Number of days required for the bolt height to reach 5cm,,,,2016-06-27T14:14:01.467000Z,0,TO:0000344,days to flowering trait,"""A flowering time trait (TO:0002616)which is the number of days required for an individual flower (PO:0009046), a whole plant (PO:0000003) or a plant population to reach flowering stage (PO:0007616) from a predetermined time point (e.g. the date of seed sowing, seedling transplant, or seedling emergence)."" [GR:pj, TO:cooperl]","Often determinded by either pollen shedding, exsertion of the anthers or simply opening of the flower.",PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,EO:0007269,growth chamber study,"""The treatment involving study type in which plants were grown in growth chambers."" [GR:pj]",,PECO,Plant Environmental Conditions,https://bioportal.bioontology.org/ontologies/PECO,UO:0000033,day,"""A time unit which is equal to 24 hours."" [Wikipedia:Wikipedia]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),28,YEL ,10.21958/phenotype:28,"Atwell et. al, Nature 2010","Yellowing is a precocious,more diffused leaf chlorosis.Accessions were divided in three subgroups (mild, intermediate and severe) according to the severity of the yellowing.",,,,2016-06-27T14:14:01.105000Z,0,TO:0006060,leaf chlorosis,"""A leaf color trait (TO:0006060) describing the yellowing of leaves, due to insufficient production of chlorophyll."" [GR:Karthik, TO:moorel]",Leaf surface affected by abiotic stresses like insecticides and cold temperature as evidenced by chlorotic tissue.,PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,EO:0007269,growth chamber study,"""The treatment involving study type in which plants were grown in growth chambers."" [GR:pj]",,PECO,Plant Environmental Conditions,https://bioportal.bioontology.org/ontologies/PECO,UO:0000186,dimensionless unit,"""A unit which is a standard measure of physical quantity consisting of only a numerical number without any units."" [Wikipedia:Wikipedia]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),746,Z-mean Total length day004,10.21958/phenotype:746,Root growth rates under nutrient deficiency,individual root growth was measured as the mean of 3 Arabidopsis seedlings.,,0,"Seedlings were grown on MS plates at 22°C in a growth chamber with long day conditions (16h light, 8h dark)",2019-07-16T09:11:48.633000Z,0,TO:0000227,root length,"""A root morphology trait (TO:0000043) which is the length of one or more roots (PO:0009005)."" [GR:jcl\nGR\:pj, TO:austin_meier\nTO\:cooperl]",refer to PATO:0000122- A 1-D extent quality which is equal to the distance between two points.,PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,EO:0007147,plant growth medium,"""An abiotic plant treatment (EO:0007191) involving the use of a solid or liquid substrate for growing plants or tissue-cultured plant samples."" [GR:pj, PO:cooperl]",,PECO,Plant Environmental Conditions,https://bioportal.bioontology.org/ontologies/PECO,UO:0000241,micron pixel,"""A spatial resolution unit which is equal to a pixel size of one micrometer."" [Wikipedia:Wikipedia]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),720,RGR P Zn,10.21958/phenotype:720,Root growth rates under nutrient deficiency,individual root growth was measured as the mean of 3 Arabidopsis seedlings between day 4 and 6 on MS plates. This phenotype is the oot growth rates for seedlings growing under -P and -Zn.,,0,"Seedlings were grown on MS plates at 22°C in a growth chamber with long day conditions (16h light, 8h dark)",2019-07-16T09:11:48.576000Z,0,TO:0000516,relative root length,"""The relative length of the root determined after a given treatment as compared to the one determined under normal conditions."" [GR:pj]",,PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,EO:0007147,plant growth medium,"""An abiotic plant treatment (EO:0007191) involving the use of a solid or liquid substrate for growing plants or tissue-cultured plant samples."" [GR:pj, PO:cooperl]",,PECO,Plant Environmental Conditions,https://bioportal.bioontology.org/ontologies/PECO,UO:0000280,rate unit,"""A unit which represents a standard measurement occurrence of a process per unit time."" [UOC:GVG]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),56,RP GH,10.21958/phenotype:56,"Atwell et. al, Nature 2010",Reproduction period: number of days between the appearance of the first flower and the plant complete senescence,,,,2016-06-27T14:14:01.557000Z,0,TO:0000366,reproductive growth time,"""Measure of time taken by the reproductive growth phase in a plant's life cycle."" [GR:pj]",,PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,EO:0007269,growth chamber study,"""The treatment involving study type in which plants were grown in growth chambers."" [GR:pj]",,PECO,Plant Environmental Conditions,https://bioportal.bioontology.org/ontologies/PECO,UO:0000033,day,"""A time unit which is equal to 24 hours."" [Wikipedia:Wikipedia]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),74,Hiks1,10.21958/phenotype:74,"Atwell et. al, Nature 2010","All interactions were scored specifically on first true leaves as compatible, incompatible or intermediate depending on the consistency of presence / absence of sporangiophores determined on 5-10 seedlings of each genotype with three independent replications",,,,2016-06-27T14:14:01.657000Z,0,TO:0002703,protist disease resistance,"""The resistance exhibited by a plant or a group of plants (population) in response to the disease caused by a protist infection as compared to the susceptible and/or the reference plants of the same species."" [GR:pj]",,PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,EO:0007269,growth chamber study,"""The treatment involving study type in which plants were grown in growth chambers."" [GR:pj]",,PECO,Plant Environmental Conditions,https://bioportal.bioontology.org/ontologies/PECO,UO:0000186,dimensionless unit,"""A unit which is a standard measure of physical quantity consisting of only a numerical number without any units."" [Wikipedia:Wikipedia]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),138,YieldPlantingSummerLocSweden2009,10.21958/phenotype:138,Flowering time in simulated seasons,Yield was recorded as dry seed weight in grams in Experiment 2 with two replicates under each condition,,,,2016-07-04T11:16:56.412000Z,0,TO:0000181,seed weight,"""A seed morphology trait (TO:0000184) which is the weight of a seed (PO:0009010)."" [GR:pj, ICIS:1058, PO:0009010, TO:moorel]",Seed weight is a component of seed yield (TO:0000905) and seed quality (TO:0000162). Refer to weight (PATO:0000128): A physical quality inhering in a bearer that has mass near a gravitational body.,PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,,,,,,,,UO:0000186,dimensionless unit,"""A unit which is a standard measure of physical quantity consisting of only a numerical number without any units."" [Wikipedia:Wikipedia]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),34,LDV,10.21958/phenotype:34,"Atwell et. al, Nature 2010","Number of days to flowering under long days after 4 weeks vernalization. Seeds were stratified, and days we counted from the end of stratification. The experiment was stopped at 200 d, and accessions that had not flowered at that point were assigned a value of 200",,,,2016-06-27T14:14:01.452000Z,0,TO:0000344,days to flowering trait,"""A flowering time trait (TO:0002616)which is the number of days required for an individual flower (PO:0009046), a whole plant (PO:0000003) or a plant population to reach flowering stage (PO:0007616) from a predetermined time point (e.g. the date of seed sowing, seedling transplant, or seedling emergence)."" [GR:pj, TO:cooperl]","Often determinded by either pollen shedding, exsertion of the anthers or simply opening of the flower.",PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,EO:0007269,growth chamber study,"""The treatment involving study type in which plants were grown in growth chambers."" [GR:pj]",,PECO,Plant Environmental Conditions,https://bioportal.bioontology.org/ontologies/PECO,UO:0000033,day,"""A time unit which is equal to 24 hours."" [Wikipedia:Wikipedia]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),1393,Leaf S Mine (μg/g),10.21958/phenotype:1393,Pb Mine soil,"S concentrations in leaves, cultivated in Pb-enriched mine soil. Elemental analysis was performed with an ICP-OES (PerkinElmer).",,0,"Seeds of the Arabidopsis thaliana HapMap cohort (360 natural populations) were surface sterilized using 3:10 bleach solution in constant agitation for 10 minutes and rinsed with sterile water six times. Seeds were stratified for 4 days at 4 C in 0.1% agar solution to synchronize germination, then 5 seeds per accession were sown in two soil types with contrasted Pb concentrations into pot trays. The control soil was a mix of commercial potting mix soil with perlite (2:1); the mine soil was a mix of soil from an ancient lead mine (Mina de Can Vergeli; 41°53'42.4""N 3°01'11.7""E), commercial potting mix soil and perlite (2:1:1). Trays were placed in a growth chamber with 150 mmol/m2s of light intensity, 12h light/12h dark photoperiod, and 25 ºC /20 ºC day/night temperature. Trays were bottom-watered twice weekly with deionized water. Fifty-day old plants were harvested to measure its nutrient mineral contents.",2021-07-02T08:52:48.135289Z,0,TO:0006046,sulfur concentration,"""A mineral and ion content related trait (TO:0000465) which is the concentration of sulfur (CHEBI:26835) in some plant structure (PO:0009011)."" [GR:Karthik]",,PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,EO:0007248,green house study,"""The treatment where the plants were grown under green house conditions. This may involve supplemental treatments in addition to any standard conditions."" [GR:pj]",,PECO,Plant Environmental Conditions,https://bioportal.bioontology.org/ontologies/PECO,UO:0000023,microgram,"""A mass unit which is equal to one millionth of a gram or 10^[-6] g."" [UOC:GVG]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),761,root length day001 minusZn,10.21958/phenotype:761,Root growth under Zn deficiency Bouain et al. 2018,Primary root growth has been measured with the Brat software.,,0,"Arabidopsis plants have been grown on plates containing zinc deficiency (-Zn) medium in presence of 1% (wt/vol) sucrose and 0.8% (wt/vol) agar, over 7 days starting three days after imbibition.",2019-07-28T11:31:29.569000Z,0,TO:0000227,root length,"""A root morphology trait (TO:0000043) which is the length of one or more roots (PO:0009005)."" [GR:jcl\nGR\:pj, TO:austin_meier\nTO\:cooperl]",refer to PATO:0000122- A 1-D extent quality which is equal to the distance between two points.,PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,EO:0007147,plant growth medium,"""An abiotic plant treatment (EO:0007191) involving the use of a solid or liquid substrate for growing plants or tissue-cultured plant samples."" [GR:pj, PO:cooperl]",,PECO,Plant Environmental Conditions,https://bioportal.bioontology.org/ontologies/PECO,UO:0000241,micron pixel,"""A spatial resolution unit which is equal to a pixel size of one micrometer."" [Wikipedia:Wikipedia]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),83,At2,10.21958/phenotype:83,"Atwell et. al, Nature 2010",,,,,2016-06-27T14:14:01.700000Z,0,TO:0000315,bacterial disease resistance,"""The resistance exhibited by a plant or a group of plants (population) in response to the disease caused by a bacterial pathogen infection as compared to the susceptible and/or the reference plants of the same species."" [GR:pj]",It represents the damage done by the diease and/or the pathogen to the plant. The damage is a direct measure of resistance to the particular bacterial strain causing the disease.,PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,EO:0007269,growth chamber study,"""The treatment involving study type in which plants were grown in growth chambers."" [GR:pj]",,PECO,Plant Environmental Conditions,https://bioportal.bioontology.org/ontologies/PECO,UO:0000210,colony forming unit,"""A dimensionless count unit which a measure of viable bacterial numbers."" [Wikipedia:Wikipedia]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),67,As75,10.21958/phenotype:67,"Atwell et. al, Nature 2010","Arsenic concentrations in leaves, grown in soil. Elemental analysis was performed with an ICP-MS (PerkinElmer). Sample normalized to calculated weights as described in Baxter et al., 2008",,,,2016-06-27T14:14:01.624000Z,0,TO:0006054,arsenic concentration,"""A mineral and ion content related trait (TO:0000465) which is the concentration of arsenic (CHEBI:22632) in some plant structure (PO:0009011)."" [GR:Karthik]",,PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,EO:0007269,growth chamber study,"""The treatment involving study type in which plants were grown in growth chambers."" [GR:pj]",,PECO,Plant Environmental Conditions,https://bioportal.bioontology.org/ontologies/PECO,UO:0000051,concentration unit,"""A unit which represents a standard measurement of how much of a given substance there is mixed with another substance."" [UOC:GVG]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),63,At1 CFU2,10.21958/phenotype:63,"Atwell et. al, Nature 2010",,,,,2016-06-27T14:14:01.605000Z,0,TO:0000315,bacterial disease resistance,"""The resistance exhibited by a plant or a group of plants (population) in response to the disease caused by a bacterial pathogen infection as compared to the susceptible and/or the reference plants of the same species."" [GR:pj]",It represents the damage done by the diease and/or the pathogen to the plant. The damage is a direct measure of resistance to the particular bacterial strain causing the disease.,PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,EO:0007269,growth chamber study,"""The treatment involving study type in which plants were grown in growth chambers."" [GR:pj]",,PECO,Plant Environmental Conditions,https://bioportal.bioontology.org/ontologies/PECO,UO:0000210,colony forming unit,"""A dimensionless count unit which a measure of viable bacterial numbers."" [Wikipedia:Wikipedia]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),90,Seedling Growth,10.21958/phenotype:90,"Atwell et. al, Nature 2010",Seedling growth rate was given by leaf area divided by the number of days of growth since sowing ( in cm2/day),,,,2016-06-27T14:14:01.733000Z,0,TO:0000515,relative growth rate,"""The relative growth of the plant determined after a given treatment as compared to the one determined under normal conditions."" [GR:pj]",,PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,EO:0007269,growth chamber study,"""The treatment involving study type in which plants were grown in growth chambers."" [GR:pj]",,PECO,Plant Environmental Conditions,https://bioportal.bioontology.org/ontologies/PECO,UO:0000190,ratio,"""A dimensionless unit which denotes an amount or magnitude of one quantity relative to another."" [Wikipedia:Wikipedia]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),673,MRLpTRS75,10.21958/phenotype:673,Salt induced changes in Root System Architecture,Ratio between Main Root Length and Total Root Size at 75 mM NaCl,,0,"1/2 MS medium, 1% agar, pH 5.8 with KOH, plants transferred to media containing 75 mM NaCl 4 days after germination. Root architecture scored 8 days after transfer to treatment media.",2019-05-06T12:47:15.847000Z,0,TO:0000043,root morphology trait,"""A plant axis morphology trait (TO:0000738) which is a quality of a root (PO:0025025)."" [GR:pj, PO:0025025, POC:cooperl]",,PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,EO:0001024,vertical agar growth medium,"""An agar growth medium (EO:0001023) involving use of solid growth media in a vertical orientation."" [PO:cooperl]",,PECO,Plant Environmental Conditions,https://bioportal.bioontology.org/ontologies/PECO,UO:0000190,ratio,"""A dimensionless unit which denotes an amount or magnitude of one quantity relative to another."" [Wikipedia:Wikipedia]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),666,LRDpMR75,10.21958/phenotype:666,Salt induced changes in Root System Architecture,EZ-Rhizo - Lateral Root Density per cm of Main Root at 75 mM NaCl,,0,"1/2 MS medium, 1% agar, pH 5.8 with KOH, plants transferred to media containing 75 mM NaCl 4 days after germination. Root architecture scored 8 days after transfer to treatment media.",2019-05-06T12:47:15.844000Z,0,TO:0000043,root morphology trait,"""A plant axis morphology trait (TO:0000738) which is a quality of a root (PO:0025025)."" [GR:pj, PO:0025025, POC:cooperl]",,PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,EO:0001024,vertical agar growth medium,"""An agar growth medium (EO:0001023) involving use of solid growth media in a vertical orientation."" [PO:cooperl]",,PECO,Plant Environmental Conditions,https://bioportal.bioontology.org/ontologies/PECO,UO:0000189,count unit,"""A dimensionless unit which denotes a simple count of things."" [MGED:MGED]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),45,Germ 22,10.21958/phenotype:45,"Atwell et. al, Nature 2010",Days to germination of each accession were recorded daily at each temperature upon first emergence of cotyledons,,,,2016-06-27T14:14:01.505000Z,0,TO:0006061,days to germinate,"""Number of days taken from the day of sowing to the first emergence of cotyledons or hypocotyl."" [GR:curators]",,PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,EO:0007269,growth chamber study,"""The treatment involving study type in which plants were grown in growth chambers."" [GR:pj]",,PECO,Plant Environmental Conditions,https://bioportal.bioontology.org/ontologies/PECO,UO:0000033,day,"""A time unit which is equal to 24 hours."" [Wikipedia:Wikipedia]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),694,LRLpMRL1225,10.21958/phenotype:694,Salt induced changes in Root System Architecture,Ratio of Lateral Root Length (cummulative) and Main Root Length at 125 mM NaCl,,0,"1/2 MS medium, 1% agar, pH 5.8 with KOH, plants transferred to media containing 125 mM NaCl 4 days after germination. Root architecture scored 8 days after transfer to treatment media.",2019-05-06T12:47:15.857000Z,0,TO:0000043,root morphology trait,"""A plant axis morphology trait (TO:0000738) which is a quality of a root (PO:0025025)."" [GR:pj, PO:0025025, POC:cooperl]",,PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,EO:0001024,vertical agar growth medium,"""An agar growth medium (EO:0001023) involving use of solid growth media in a vertical orientation."" [PO:cooperl]",,PECO,Plant Environmental Conditions,https://bioportal.bioontology.org/ontologies/PECO,UO:0000190,ratio,"""A dimensionless unit which denotes an amount or magnitude of one quantity relative to another."" [Wikipedia:Wikipedia]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),134,DTF sweden 2009 (1st experiment),10.21958/phenotype:134,Flowering time in simulated seasons,,,,,2016-07-04T11:16:56.394000Z,0,TO:0000344,days to flowering trait,"""A flowering time trait (TO:0002616)which is the number of days required for an individual flower (PO:0009046), a whole plant (PO:0000003) or a plant population to reach flowering stage (PO:0007616) from a predetermined time point (e.g. the date of seed sowing, seedling transplant, or seedling emergence)."" [GR:pj, TO:cooperl]","Often determinded by either pollen shedding, exsertion of the anthers or simply opening of the flower.",PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,,,,,,,,UO:0000033,day,"""A time unit which is equal to 24 hours."" [Wikipedia:Wikipedia]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),274,S34,10.21958/phenotype:274,Ion Concentration,Sulfur concentrations in leaves,,,,2017-03-21T12:58:51.182000Z,0,TO:0006046,sulfur concentration,"""A mineral and ion content related trait (TO:0000465) which is the concentration of sulfur (CHEBI:26835) in some plant structure (PO:0009011)."" [GR:Karthik]",,PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,EO:0007269,growth chamber study,"""The treatment involving study type in which plants were grown in growth chambers."" [GR:pj]",,PECO,Plant Environmental Conditions,https://bioportal.bioontology.org/ontologies/PECO,UO:0000051,concentration unit,"""A unit which represents a standard measurement of how much of a given substance there is mixed with another substance."" [UOC:GVG]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,6
Arabidopsis thaliana (NCBI: 3702),144,M216T665,10.21958/phenotype:144,DAAR,LC-MS–based untargeted metabolite profiles of leaf tissue were collected for each accession. Metabolite feature with a mass-to-charge ratio of 216 and a retention time of 665 s,,,,2016-07-04T11:48:19.042000Z,0,TO:0000281,metabolite content trait,"""The trait associated with an assay to determine the affected metabolite's profile."" [GR:pj]",,PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,,,,,,,,UO:0000051,concentration unit,"""A unit which represents a standard measurement of how much of a given substance there is mixed with another substance."" [UOC:GVG]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),39,After Vern Growth,10.21958/phenotype:39,"Atwell et. al, Nature 2010",Vegetative growth rate after vernalization was estimated as the increment of cm2 leaf area per day between each of the three time points for which leaf area was measured,,,,2016-06-27T14:14:01.477000Z,0,TO:0000515,relative growth rate,"""The relative growth of the plant determined after a given treatment as compared to the one determined under normal conditions."" [GR:pj]",,PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,EO:0007269,growth chamber study,"""The treatment involving study type in which plants were grown in growth chambers."" [GR:pj]",,PECO,Plant Environmental Conditions,https://bioportal.bioontology.org/ontologies/PECO,UO:0000190,ratio,"""A dimensionless unit which denotes an amount or magnitude of one quantity relative to another."" [Wikipedia:Wikipedia]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),690,Apical125,10.21958/phenotype:690,Salt induced changes in Root System Architecture,EZ-Rhizo - length of the Apical Zone at 0 mM NaCl,,0,"1/2 MS medium, 1% agar, pH 5.8 with KOH, plants transferred to media containing 75 mM NaCl 4 days after germination. Root architecture scored 8 days after transfer to treatment media.",2019-05-06T12:47:15.855000Z,0,TO:0000043,root morphology trait,"""A plant axis morphology trait (TO:0000738) which is a quality of a root (PO:0025025)."" [GR:pj, PO:0025025, POC:cooperl]",,PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,EO:0001024,vertical agar growth medium,"""An agar growth medium (EO:0001023) involving use of solid growth media in a vertical orientation."" [PO:cooperl]",,PECO,Plant Environmental Conditions,https://bioportal.bioontology.org/ontologies/PECO,UO:0000001,length unit,"""A unit which is a standard measure of the distance between two points."" [Wikipedia:Wikipedia]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),669,aLRL75,10.21958/phenotype:669,Salt induced changes in Root System Architecture,EZ-Rhizo - average lateral root length at 75 mM NaCl,,0,"1/2 MS medium, 1% agar, pH 5.8 with KOH, plants transferred to media containing 75 mM NaCl 4 days after germination. Root architecture scored 8 days after transfer to treatment media.",2019-05-06T12:47:15.846000Z,0,TO:0000043,root morphology trait,"""A plant axis morphology trait (TO:0000738) which is a quality of a root (PO:0025025)."" [GR:pj, PO:0025025, POC:cooperl]",,PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,EO:0001024,vertical agar growth medium,"""An agar growth medium (EO:0001023) involving use of solid growth media in a vertical orientation."" [PO:cooperl]",,PECO,Plant Environmental Conditions,https://bioportal.bioontology.org/ontologies/PECO,UO:0000001,length unit,"""A unit which is a standard measure of the distance between two points."" [Wikipedia:Wikipedia]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),36,8W GH LN,10.21958/phenotype:36,"Atwell et. al, Nature 2010",Leaf number was scored as the number of rosette leaves and the number of cauline leaves when the bolt reached 5cm,,,,2016-06-27T14:14:01.462000Z,0,TO:0000241,leaf number,"""A shoot system morphology trait (TO:0000077) which is the number of leaves (PO:0025034) in a shoot system (PO:0009006) of a plant."" [GR:pj, TO:cooperl]",,PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,EO:0007269,growth chamber study,"""The treatment involving study type in which plants were grown in growth chambers."" [GR:pj]",,PECO,Plant Environmental Conditions,https://bioportal.bioontology.org/ontologies/PECO,UO:0000189,count unit,"""A dimensionless unit which denotes a simple count of things."" [MGED:MGED]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),287,Cd111,10.21958/phenotype:287,Ion Concentration,Cadmium concentrations in leaves,,,,2017-03-21T12:58:51.203000Z,0,TO:0006059,cadmium concentration,"""A mineral and ion content related trait (TO:0000465) which is the concentration of cadmium (CHEBI:22978) in some plant structure (PO:0009011).\n."" [GR:Karthik]",,PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,EO:0007269,growth chamber study,"""The treatment involving study type in which plants were grown in growth chambers."" [GR:pj]",,PECO,Plant Environmental Conditions,https://bioportal.bioontology.org/ontologies/PECO,UO:0000051,concentration unit,"""A unit which represents a standard measurement of how much of a given substance there is mixed with another substance."" [UOC:GVG]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,6
Arabidopsis thaliana (NCBI: 3702),102,FT22,10.21958/phenotype:102,"Atwell et. al, Nature 2010","Plants were checked bi-weekly for presence of first buds, and the average flowering time of 4 plants of the same accession were collected",,,,2016-06-27T14:14:01.802000Z,0,TO:0000344,days to flowering trait,"""A flowering time trait (TO:0002616)which is the number of days required for an individual flower (PO:0009046), a whole plant (PO:0000003) or a plant population to reach flowering stage (PO:0007616) from a predetermined time point (e.g. the date of seed sowing, seedling transplant, or seedling emergence)."" [GR:pj, TO:cooperl]","Often determinded by either pollen shedding, exsertion of the anthers or simply opening of the flower.",PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,EO:0007269,growth chamber study,"""The treatment involving study type in which plants were grown in growth chambers."" [GR:pj]",,PECO,Plant Environmental Conditions,https://bioportal.bioontology.org/ontologies/PECO,UO:0000033,day,"""A time unit which is equal to 24 hours."" [Wikipedia:Wikipedia]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),688,LRL125,10.21958/phenotype:688,Salt induced changes in Root System Architecture,EZ-Rhizo - cummulative lateral root length at 125 mM NaCl,,0,"1/2 MS medium, 1% agar, pH 5.8 with KOH, plants transferred to media containing 125 mM NaCl 4 days after germination. Root architecture scored 8 days after transfer to treatment media.",2019-05-06T12:47:15.854000Z,0,TO:0000043,root morphology trait,"""A plant axis morphology trait (TO:0000738) which is a quality of a root (PO:0025025)."" [GR:pj, PO:0025025, POC:cooperl]",,PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,EO:0001024,vertical agar growth medium,"""An agar growth medium (EO:0001023) involving use of solid growth media in a vertical orientation."" [PO:cooperl]",,PECO,Plant Environmental Conditions,https://bioportal.bioontology.org/ontologies/PECO,UO:0000001,length unit,"""A unit which is a standard measure of the distance between two points."" [Wikipedia:Wikipedia]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),277,Mn55,10.21958/phenotype:277,Ion Concentration,Manganese concentrations in leaves,,,,2017-03-21T12:58:51.186000Z,0,TO:0006048,manganese concentration,"""A manganese content (TO:0020091) which is the concentration of manganese (CHEBI:25154) in some plant structure (PO:0009011)"" [GR:Karthik]",,PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,EO:0007269,growth chamber study,"""The treatment involving study type in which plants were grown in growth chambers."" [GR:pj]",,PECO,Plant Environmental Conditions,https://bioportal.bioontology.org/ontologies/PECO,UO:0000051,concentration unit,"""A unit which represents a standard measurement of how much of a given substance there is mixed with another substance."" [UOC:GVG]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,6
Arabidopsis thaliana (NCBI: 3702),683,MRVA125,10.21958/phenotype:683,Salt induced changes in Root System Architecture,EZ-Rhizo - Main Root Vector Angle at 125 mM NaCl,,0,"1/2 MS medium, 1% agar, pH 5.8 with KOH, plants transferred to media containing 125 mM NaCl 4 days after germination. Root architecture scored 8 days after transfer to treatment media.",2019-05-06T12:47:15.852000Z,0,TO:0000043,root morphology trait,"""A plant axis morphology trait (TO:0000738) which is a quality of a root (PO:0025025)."" [GR:pj, PO:0025025, POC:cooperl]",,PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,EO:0001024,vertical agar growth medium,"""An agar growth medium (EO:0001023) involving use of solid growth media in a vertical orientation."" [PO:cooperl]",,PECO,Plant Environmental Conditions,https://bioportal.bioontology.org/ontologies/PECO,UO:0000185,degree,"""A plane angle unit which is equal to 1/360 of a full rotation or 1.7453310^[-2] rad."" [Wikipedia:Wikipedia]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),118,DTFlocSweden2009,10.21958/phenotype:118,Flowering time in simulated seasons,,,,,2016-07-04T11:16:56.171000Z,0,TO:0000344,days to flowering trait,"""A flowering time trait (TO:0002616)which is the number of days required for an individual flower (PO:0009046), a whole plant (PO:0000003) or a plant population to reach flowering stage (PO:0007616) from a predetermined time point (e.g. the date of seed sowing, seedling transplant, or seedling emergence)."" [GR:pj, TO:cooperl]","Often determinded by either pollen shedding, exsertion of the anthers or simply opening of the flower.",PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,,,,,,,,UO:0000186,dimensionless unit,"""A unit which is a standard measure of physical quantity consisting of only a numerical number without any units."" [Wikipedia:Wikipedia]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),662,Depth75,10.21958/phenotype:662,Salt induced changes in Root System Architecture,EZ-Rhizo - Main Root Depth - a vertical line from the top-most to bottom-most point of the main root - at 75 mM NaCl,,0,"1/2 MS medium, 1% agar, pH 5.8 with KOH, plants transferred to media containing 75 mM NaCl 4 days after germination. Root architecture scored 8 days after transfer to treatment media.",2019-05-06T12:47:15.843000Z,0,TO:0000043,root morphology trait,"""A plant axis morphology trait (TO:0000738) which is a quality of a root (PO:0025025)."" [GR:pj, PO:0025025, POC:cooperl]",,PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,EO:0001024,vertical agar growth medium,"""An agar growth medium (EO:0001023) involving use of solid growth media in a vertical orientation."" [PO:cooperl]",,PECO,Plant Environmental Conditions,https://bioportal.bioontology.org/ontologies/PECO,UO:0000001,length unit,"""A unit which is a standard measure of the distance between two points."" [Wikipedia:Wikipedia]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),284,Se82,10.21958/phenotype:284,Ion Concentration,Selenium concentrations in leaves,,,,2017-03-21T12:58:51.199000Z,0,TO:0006055,selenium concentration,"""A mineral and ion content related trait (TO:0000465) which is the concentration of selenium (CHEBI:26628) in some plant structure (PO:0009011)."" [GR:Karthik]",,PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,EO:0007269,growth chamber study,"""The treatment involving study type in which plants were grown in growth chambers."" [GR:pj]",,PECO,Plant Environmental Conditions,https://bioportal.bioontology.org/ontologies/PECO,UO:0000051,concentration unit,"""A unit which represents a standard measurement of how much of a given substance there is mixed with another substance."" [UOC:GVG]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,6
Arabidopsis thaliana (NCBI: 3702),111,SizePlantingSummerLocSweden2009,10.21958/phenotype:111,Flowering time in simulated seasons,,,,,2016-07-04T11:16:56.138000Z,0,,,,,,,,,,,,,,,UO:0000186,dimensionless unit,"""A unit which is a standard measure of physical quantity consisting of only a numerical number without any units."" [Wikipedia:Wikipedia]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),16,LY ,10.21958/phenotype:16,"Atwell et. al, Nature 2010",Presence of lesioning and yellowing.,,,,2016-06-27T14:14:00.786000Z,0,TO:0000652,leaf necrosis,"""A leaf morphology trait (TO:0000748) which is the leaf surface area affected by abiotic stresses like insecticides and cold temperature as evidenced by chlorotic and/or necrotic tissue."" [GR:pj, TO:cooperl]","If you are annotating to this term, please add an additional annotation to vascular leaf morphology (TO:0000419) or non-vascular leaf morphology trait (TO:0000925), depending on the species.",PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,EO:0007269,growth chamber study,"""The treatment involving study type in which plants were grown in growth chambers."" [GR:pj]",,PECO,Plant Environmental Conditions,https://bioportal.bioontology.org/ontologies/PECO,UO:0000186,dimensionless unit,"""A unit which is a standard measure of physical quantity consisting of only a numerical number without any units."" [Wikipedia:Wikipedia]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),62,Anthocyanin 10,10.21958/phenotype:62,"Atwell et. al, Nature 2010","Results expressed as binary data, determined by the presence (1) or absence (0) of anthocyanin in all 4 plants / accession after 8wks of growth",,,,2016-06-27T14:14:01.600000Z,0,TO:0000071,anthocyanin content,"""The anthocyanin content in a plant or plant part."" [ISBN:198506732]","Anthocyanin is the red to purple pigments composed of soluble glycosides of anthocyanidins, present in leaves and floral tissue. Usually the pigment is produced under stress conditions. Amounts of anthocyanin produced depend on stored sugar and sunlight. The more stored sugar in the leaf and brighter the autumn days, the more intense red. Anthocyanin production also increases as phosphates move out of the leaves; the lack of phosphates in young leaves can also lead to the production of anthocyanin.",PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,EO:0007269,growth chamber study,"""The treatment involving study type in which plants were grown in growth chambers."" [GR:pj]",,PECO,Plant Environmental Conditions,https://bioportal.bioontology.org/ontologies/PECO,UO:0000186,dimensionless unit,"""A unit which is a standard measure of physical quantity consisting of only a numerical number without any units."" [Wikipedia:Wikipedia]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),123,Size sweden 2009 (1st experiment),10.21958/phenotype:123,Flowering time in simulated seasons,,,,,2016-07-04T11:16:56.344000Z,0,,,,,,,,,,,,,,,UO:0000015,centimeter,"""A length unit which is equal to one hundredth of a meter or 10^[-2] m."" [NIST:NIST]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),126,DTFmainEffect2008,10.21958/phenotype:126,Flowering time in simulated seasons,,,,,2016-07-04T11:16:56.358000Z,0,TO:0000344,days to flowering trait,"""A flowering time trait (TO:0002616)which is the number of days required for an individual flower (PO:0009046), a whole plant (PO:0000003) or a plant population to reach flowering stage (PO:0007616) from a predetermined time point (e.g. the date of seed sowing, seedling transplant, or seedling emergence)."" [GR:pj, TO:cooperl]","Often determinded by either pollen shedding, exsertion of the anthers or simply opening of the flower.",PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,,,,,,,,UO:0000186,dimensionless unit,"""A unit which is a standard measure of physical quantity consisting of only a numerical number without any units."" [Wikipedia:Wikipedia]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),99,8W GH FT,10.21958/phenotype:99,"Atwell et. al, Nature 2010",Flowering time was scored as the number of days for the bolt to reach 5cm,,,,2016-06-27T14:14:01.788000Z,0,TO:0000344,days to flowering trait,"""A flowering time trait (TO:0002616)which is the number of days required for an individual flower (PO:0009046), a whole plant (PO:0000003) or a plant population to reach flowering stage (PO:0007616) from a predetermined time point (e.g. the date of seed sowing, seedling transplant, or seedling emergence)."" [GR:pj, TO:cooperl]","Often determinded by either pollen shedding, exsertion of the anthers or simply opening of the flower.",PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,EO:0007269,growth chamber study,"""The treatment involving study type in which plants were grown in growth chambers."" [GR:pj]",,PECO,Plant Environmental Conditions,https://bioportal.bioontology.org/ontologies/PECO,UO:0000033,day,"""A time unit which is equal to 24 hours."" [Wikipedia:Wikipedia]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),726,RGR Zn norm,10.21958/phenotype:726,Root growth rates under nutrient deficiency,individual root growth was measured as the mean of 3 Arabidopsis seedlings between day 4 and 6 on MS plates. This phenotype is the normalized root growth rates (compared to growth on MS) for seedlings growing under -Zn.,,0,"Seedlings were grown on MS plates at 22°C in a growth chamber with long day conditions (16h light, 8h dark)",2019-07-16T09:11:48.622000Z,0,TO:0000516,relative root length,"""The relative length of the root determined after a given treatment as compared to the one determined under normal conditions."" [GR:pj]",,PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,EO:0007147,plant growth medium,"""An abiotic plant treatment (EO:0007191) involving the use of a solid or liquid substrate for growing plants or tissue-cultured plant samples."" [GR:pj, PO:cooperl]",,PECO,Plant Environmental Conditions,https://bioportal.bioontology.org/ontologies/PECO,UO:0000190,ratio,"""A dimensionless unit which denotes an amount or magnitude of one quantity relative to another."" [Wikipedia:Wikipedia]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),655,aLRLpMRL0,10.21958/phenotype:655,Salt induced changes in Root System Architecture,EZ-Rhizo - the average length of lateral root per main root length at 0 mM NaCl,,0,"1/2 MS medium, 1% agar, pH 5.8 with KOH, plants transferred to media containing 0 mM NaCl 4 days after germination. Root architecture scored 4 days after transfer to treatment media.",2019-05-06T12:47:15.840000Z,0,TO:0000043,root morphology trait,"""A plant axis morphology trait (TO:0000738) which is a quality of a root (PO:0025025)."" [GR:pj, PO:0025025, POC:cooperl]",,PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,EO:0001024,vertical agar growth medium,"""An agar growth medium (EO:0001023) involving use of solid growth media in a vertical orientation."" [PO:cooperl]",,PECO,Plant Environmental Conditions,https://bioportal.bioontology.org/ontologies/PECO,UO:0000190,ratio,"""A dimensionless unit which denotes an amount or magnitude of one quantity relative to another."" [Wikipedia:Wikipedia]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),41,LN22,10.21958/phenotype:41,"Atwell et. al, Nature 2010","Plants were checked bi-weekly for presence of first buds, and the average leaf number at flowering time of 4 plants of the same accession were collected",,,,2016-06-27T14:14:01.486000Z,0,TO:0000241,leaf number,"""A shoot system morphology trait (TO:0000077) which is the number of leaves (PO:0025034) in a shoot system (PO:0009006) of a plant."" [GR:pj, TO:cooperl]",,PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,EO:0007269,growth chamber study,"""The treatment involving study type in which plants were grown in growth chambers."" [GR:pj]",,PECO,Plant Environmental Conditions,https://bioportal.bioontology.org/ontologies/PECO,UO:0000189,count unit,"""A dimensionless unit which denotes a simple count of things."" [MGED:MGED]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),46,Leaf roll 22,10.21958/phenotype:46,"Atwell et. al, Nature 2010","Results expressed as binary data, determined by the presence (1) or absence (0) of rolled leaves in all 4 plants / accession at 5 weeks growth",,,,2016-06-27T14:14:01.510000Z,0,TO:0006064,rolled leaf,"""Leaf lamina rolled into a tube like structure."" [GR:Karthik]",,PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,EO:0007269,growth chamber study,"""The treatment involving study type in which plants were grown in growth chambers."" [GR:pj]",,PECO,Plant Environmental Conditions,https://bioportal.bioontology.org/ontologies/PECO,UO:0000186,dimensionless unit,"""A unit which is a standard measure of physical quantity consisting of only a numerical number without any units."" [Wikipedia:Wikipedia]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),1389,Growth rate,10.21958/phenotype:1389,Pb Mine soil,Rosette diameter (RD) of 3 individuals per accession and soil type was measured weekly for 4 weeks. Growth rate of each accession was calculated as mean(RDMine) / mean(RDControl) of the last RD measure.,,0,"Seeds of the Arabidopsis thaliana HapMap cohort (360 natural populations) were surface sterilized using 3:10 bleach solution in constant agitation for 10 minutes and rinsed with sterile water six times. Seeds were stratified for 4 days at 4 C in 0.1% agar solution to synchronize germination, then 5 seeds per accession were sown in two soil types with contrasted Pb concentrations into pot trays. The control soil was a mix of commercial potting mix soil with perlite (2:1); the mine soil was a mix of soil from an ancient lead mine (Mina de Can Vergeli; 41°53'42.4""N 3°01'11.7""E), commercial potting mix soil and perlite (2:1:1). Trays were placed in a growth chamber with 150 mmol/m2s of light intensity, 12h light/12h dark photoperiod, and 25 ºC /20 ºC day/night temperature. Trays were bottom-watered twice weekly with deionized water.",2021-07-02T08:52:48.132444Z,0,TO:0000515,relative growth rate,"""The relative growth of the plant determined after a given treatment as compared to the one determined under normal conditions."" [GR:pj]",,PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,EO:0007248,green house study,"""The treatment where the plants were grown under green house conditions. This may involve supplemental treatments in addition to any standard conditions."" [GR:pj]",,PECO,Plant Environmental Conditions,https://bioportal.bioontology.org/ontologies/PECO,UO:0000190,ratio,"""A dimensionless unit which denotes an amount or magnitude of one quantity relative to another."" [Wikipedia:Wikipedia]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),719,RGR P,10.21958/phenotype:719,Root growth rates under nutrient deficiency,individual root growth was measured as the mean of 3 Arabidopsis seedlings between day 4 and 6 on MS plates. This phenotype is the root growth rates for seedlings growing under -P.,,0,"Seedlings were grown on MS plates at 22°C in a growth chamber with long day conditions (16h light, 8h dark)",2019-07-16T09:11:48.575000Z,0,TO:0000516,relative root length,"""The relative length of the root determined after a given treatment as compared to the one determined under normal conditions."" [GR:pj]",,PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,EO:0007147,plant growth medium,"""An abiotic plant treatment (EO:0007191) involving the use of a solid or liquid substrate for growing plants or tissue-cultured plant samples."" [GR:pj, PO:cooperl]",,PECO,Plant Environmental Conditions,https://bioportal.bioontology.org/ontologies/PECO,UO:0000280,rate unit,"""A unit which represents a standard measurement occurrence of a process per unit time."" [UOC:GVG]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),53,0W GH FT,10.21958/phenotype:53,"Atwell et. al, Nature 2010",Flowering time was scored as the number of days for the bolt to reach 5cm,,,,2016-06-27T14:14:01.542000Z,0,TO:0000344,days to flowering trait,"""A flowering time trait (TO:0002616)which is the number of days required for an individual flower (PO:0009046), a whole plant (PO:0000003) or a plant population to reach flowering stage (PO:0007616) from a predetermined time point (e.g. the date of seed sowing, seedling transplant, or seedling emergence)."" [GR:pj, TO:cooperl]","Often determinded by either pollen shedding, exsertion of the anthers or simply opening of the flower.",PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,EO:0007269,growth chamber study,"""The treatment involving study type in which plants were grown in growth chambers."" [GR:pj]",,PECO,Plant Environmental Conditions,https://bioportal.bioontology.org/ontologies/PECO,UO:0000033,day,"""A time unit which is equal to 24 hours."" [Wikipedia:Wikipedia]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),32,FT Duration GH,10.21958/phenotype:32,"Atwell et. al, Nature 2010",Number of days between appearance of the first flower and the senescence of the last flower,,,,2016-06-27T14:14:01.443000Z,0,TO:0000366,reproductive growth time,"""Measure of time taken by the reproductive growth phase in a plant's life cycle."" [GR:pj]",,PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,EO:0007269,growth chamber study,"""The treatment involving study type in which plants were grown in growth chambers."" [GR:pj]",,PECO,Plant Environmental Conditions,https://bioportal.bioontology.org/ontologies/PECO,UO:0000033,day,"""A time unit which is equal to 24 hours."" [Wikipedia:Wikipedia]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),756,root length day003,10.21958/phenotype:756,Root growth under Zn deficiency Bouain et al. 2018,Primary root growth has been measured with the Brat software.,,0,"Arabidopsis plants have been grown on plates containing full growth medium in presence of 1% (wt/vol) sucrose and 0.8% (wt/vol) agar, over 7 days starting three days after imbibition.",2019-07-28T11:31:29.567000Z,0,TO:0000227,root length,"""A root morphology trait (TO:0000043) which is the length of one or more roots (PO:0009005)."" [GR:jcl\nGR\:pj, TO:austin_meier\nTO\:cooperl]",refer to PATO:0000122- A 1-D extent quality which is equal to the distance between two points.,PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,EO:0007147,plant growth medium,"""An abiotic plant treatment (EO:0007191) involving the use of a solid or liquid substrate for growing plants or tissue-cultured plant samples."" [GR:pj, PO:cooperl]",,PECO,Plant Environmental Conditions,https://bioportal.bioontology.org/ontologies/PECO,UO:0000241,micron pixel,"""A spatial resolution unit which is equal to a pixel size of one micrometer."" [Wikipedia:Wikipedia]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),275,K39,10.21958/phenotype:275,Ion Concentration,Potassium concentrations in leaves,,,,2017-03-21T12:58:51.183000Z,0,TO:0000513,potassium concentration,"""The total potassium ion concentration measured in a plant or a plant part or plant extract."" [GR:pj]",,PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,EO:0007269,growth chamber study,"""The treatment involving study type in which plants were grown in growth chambers."" [GR:pj]",,PECO,Plant Environmental Conditions,https://bioportal.bioontology.org/ontologies/PECO,UO:0000051,concentration unit,"""A unit which represents a standard measurement of how much of a given substance there is mixed with another substance."" [UOC:GVG]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,6
Arabidopsis thaliana (NCBI: 3702),649,aLRL0,10.21958/phenotype:649,Salt induced changes in Root System Architecture,EZ-Rhizo - average lateral root length at 75 mM NaCl,,0,"1/2 MS medium, 1% agar, pH 5.8 with KOH, plants transferred to media containing 0 mM NaCl 4 days after germination. Root architecture scored 4 days after transfer to treatment media.",2019-05-06T12:47:15.837000Z,0,TO:0000043,root morphology trait,"""A plant axis morphology trait (TO:0000738) which is a quality of a root (PO:0025025)."" [GR:pj, PO:0025025, POC:cooperl]",,PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,EO:0001024,vertical agar growth medium,"""An agar growth medium (EO:0001023) involving use of solid growth media in a vertical orientation."" [PO:cooperl]",,PECO,Plant Environmental Conditions,https://bioportal.bioontology.org/ontologies/PECO,UO:0000001,length unit,"""A unit which is a standard measure of the distance between two points."" [Wikipedia:Wikipedia]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),100,4W,10.21958/phenotype:100,"Atwell et. al, Nature 2010",Number of days required for the bolt height to reach 5cm,,,,2016-06-27T14:14:01.793000Z,0,TO:0000344,days to flowering trait,"""A flowering time trait (TO:0002616)which is the number of days required for an individual flower (PO:0009046), a whole plant (PO:0000003) or a plant population to reach flowering stage (PO:0007616) from a predetermined time point (e.g. the date of seed sowing, seedling transplant, or seedling emergence)."" [GR:pj, TO:cooperl]","Often determinded by either pollen shedding, exsertion of the anthers or simply opening of the flower.",PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,EO:0007269,growth chamber study,"""The treatment involving study type in which plants were grown in growth chambers."" [GR:pj]",,PECO,Plant Environmental Conditions,https://bioportal.bioontology.org/ontologies/PECO,UO:0000033,day,"""A time unit which is equal to 24 hours."" [Wikipedia:Wikipedia]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),136,DTF spain 2008 (2nd experiment),10.21958/phenotype:136,Flowering time in simulated seasons,FT was recorded daily as days to flower after germination in Experiment 2 with four replicates under spain conditions.,,,,2016-07-04T11:16:56.403000Z,0,TO:0000344,days to flowering trait,"""A flowering time trait (TO:0002616)which is the number of days required for an individual flower (PO:0009046), a whole plant (PO:0000003) or a plant population to reach flowering stage (PO:0007616) from a predetermined time point (e.g. the date of seed sowing, seedling transplant, or seedling emergence)."" [GR:pj, TO:cooperl]","Often determinded by either pollen shedding, exsertion of the anthers or simply opening of the flower.",PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,,,,,,,,UO:0000033,day,"""A time unit which is equal to 24 hours."" [Wikipedia:Wikipedia]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),656,PC1sc0,10.21958/phenotype:656,Salt induced changes in Root System Architecture,1st Principal Component - pulled using all RSA traits with prior scaling at 0 mM NaCl,,0,"1/2 MS medium, 1% agar, pH 5.8 with KOH, plants transferred to media containing 0 mM NaCl 4 days after germination. Root architecture scored 4 days after transfer to treatment media.",2019-05-06T12:47:15.840000Z,0,TO:0000043,root morphology trait,"""A plant axis morphology trait (TO:0000738) which is a quality of a root (PO:0025025)."" [GR:pj, PO:0025025, POC:cooperl]",,PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,EO:0001024,vertical agar growth medium,"""An agar growth medium (EO:0001023) involving use of solid growth media in a vertical orientation."" [PO:cooperl]",,PECO,Plant Environmental Conditions,https://bioportal.bioontology.org/ontologies/PECO,UO:0000186,dimensionless unit,"""A unit which is a standard measure of physical quantity consisting of only a numerical number without any units."" [Wikipedia:Wikipedia]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),647,LRDpBZ0,10.21958/phenotype:647,Salt induced changes in Root System Architecture,EZ-Rhizo - Lateral Root Density per cm of Branching Zone at 0 mM NaCl,,0,"1/2 MS medium, 1% agar, pH 5.8 with KOH, plants transferred to media containing 0 mM NaCl 4 days after germination. Root architecture scored 4 days after transfer to treatment media.",2019-05-06T12:47:15.837000Z,0,TO:0000043,root morphology trait,"""A plant axis morphology trait (TO:0000738) which is a quality of a root (PO:0025025)."" [GR:pj, PO:0025025, POC:cooperl]",,PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,EO:0001024,vertical agar growth medium,"""An agar growth medium (EO:0001023) involving use of solid growth media in a vertical orientation."" [PO:cooperl]",,PECO,Plant Environmental Conditions,https://bioportal.bioontology.org/ontologies/PECO,UO:0000189,count unit,"""A dimensionless unit which denotes a simple count of things."" [MGED:MGED]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),140,DTF sweden 2009 (2nd experiment),10.21958/phenotype:140,Flowering time in simulated seasons,,,,,2016-07-04T11:16:56.421000Z,0,TO:0000344,days to flowering trait,"""A flowering time trait (TO:0002616)which is the number of days required for an individual flower (PO:0009046), a whole plant (PO:0000003) or a plant population to reach flowering stage (PO:0007616) from a predetermined time point (e.g. the date of seed sowing, seedling transplant, or seedling emergence)."" [GR:pj, TO:cooperl]","Often determinded by either pollen shedding, exsertion of the anthers or simply opening of the flower.",PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,,,,,,,,UO:0000033,day,"""A time unit which is equal to 24 hours."" [Wikipedia:Wikipedia]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),139,Yield sweden 2009 (1st experiment),10.21958/phenotype:139,Flowering time in simulated seasons,Yield was recorded as dry seed weight in grams in Experiment 2 with two replicates under each condition,,,,2016-07-04T11:16:56.416000Z,0,TO:0000181,seed weight,"""A seed morphology trait (TO:0000184) which is the weight of a seed (PO:0009010)."" [GR:pj, ICIS:1058, PO:0009010, TO:moorel]",Seed weight is a component of seed yield (TO:0000905) and seed quality (TO:0000162). Refer to weight (PATO:0000128): A physical quality inhering in a bearer that has mass near a gravitational body.,PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,,,,,,,,UO:0000021,gram,"""A mass unit which is equal to one thousandth of a kilogram or 10^[-3] kg."" [NIST:NIST]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),12,Rosette Erect 22,10.21958/phenotype:12,"Atwell et. al, Nature 2010","(22°C was the only temperature at which this phenotype was frequently observed). Results were expressed as binary data, determined by the central rosette being erect (1) or not (0) in all 4 plants / accession phenotyped at 5 weeks post germination",,,,2016-06-27T14:14:00.765000Z,0,TO:0006064,rolled leaf,"""Leaf lamina rolled into a tube like structure."" [GR:Karthik]",,PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,EO:0007269,growth chamber study,"""The treatment involving study type in which plants were grown in growth chambers."" [GR:pj]",,PECO,Plant Environmental Conditions,https://bioportal.bioontology.org/ontologies/PECO,UO:0000186,dimensionless unit,"""A unit which is a standard measure of physical quantity consisting of only a numerical number without any units."" [Wikipedia:Wikipedia]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),137,YieldMainEffect2009,10.21958/phenotype:137,Flowering time in simulated seasons,Yield was recorded as dry seed weight in grams in Experiment 2 with two replicates under each condition,,,,2016-07-04T11:16:56.407000Z,0,TO:0000181,seed weight,"""A seed morphology trait (TO:0000184) which is the weight of a seed (PO:0009010)."" [GR:pj, ICIS:1058, PO:0009010, TO:moorel]",Seed weight is a component of seed yield (TO:0000905) and seed quality (TO:0000162). Refer to weight (PATO:0000128): A physical quality inhering in a bearer that has mass near a gravitational body.,PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,,,,,,,,UO:0000186,dimensionless unit,"""A unit which is a standard measure of physical quantity consisting of only a numerical number without any units."" [Wikipedia:Wikipedia]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),24,Cu65,10.21958/phenotype:24,"Atwell et. al, Nature 2010","Copper concentrations in leaves, grown in soil. Elemental analysis was performed with an ICP-MS (PerkinElmer). Sample normalized to calculated weights as described in Baxter et al., 2008",,,,2016-06-27T14:14:01.086000Z,0,TO:0006052,copper concentration,"""A copper content (TO:0020092) which is the concentration of copper (CHEBI:23377) in some plant structure (PO:0009011)"" [GR:Karthik]",,PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,EO:0007269,growth chamber study,"""The treatment involving study type in which plants were grown in growth chambers."" [GR:pj]",,PECO,Plant Environmental Conditions,https://bioportal.bioontology.org/ontologies/PECO,UO:0000051,concentration unit,"""A unit which represents a standard measurement of how much of a given substance there is mixed with another substance."" [UOC:GVG]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),760,root length day007,10.21958/phenotype:760,Root growth under Zn deficiency Bouain et al. 2018,Primary root growth has been measured with the Brat software.,,0,"Arabidopsis plants have been grown on plates containing full growth medium in presence of 1% (wt/vol) sucrose and 0.8% (wt/vol) agar, over 7 days starting three days after imbibition.",2019-07-28T11:31:29.568000Z,0,TO:0000227,root length,"""A root morphology trait (TO:0000043) which is the length of one or more roots (PO:0009005)."" [GR:jcl\nGR\:pj, TO:austin_meier\nTO\:cooperl]",refer to PATO:0000122- A 1-D extent quality which is equal to the distance between two points.,PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,EO:0007147,plant growth medium,"""An abiotic plant treatment (EO:0007191) involving the use of a solid or liquid substrate for growing plants or tissue-cultured plant samples."" [GR:pj, PO:cooperl]",,PECO,Plant Environmental Conditions,https://bioportal.bioontology.org/ontologies/PECO,UO:0000241,micron pixel,"""A spatial resolution unit which is equal to a pixel size of one micrometer."" [Wikipedia:Wikipedia]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),25,Bacterial titer,10.21958/phenotype:25,"Atwell et. al, Nature 2010","Following inoculation into leaf tissues, the titers of bacteria were measured at 0 and 4 days. Bacterial titres were measured from hole-punched leaf disks ground in 200μL of 10 mM MgSO4. Measurements were expressed as colony forming units per unit area and replicated in triplicate.",,,,2016-06-27T14:14:01.091000Z,0,TO:0000315,bacterial disease resistance,"""The resistance exhibited by a plant or a group of plants (population) in response to the disease caused by a bacterial pathogen infection as compared to the susceptible and/or the reference plants of the same species."" [GR:pj]",It represents the damage done by the diease and/or the pathogen to the plant. The damage is a direct measure of resistance to the particular bacterial strain causing the disease.,PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,EO:0007269,growth chamber study,"""The treatment involving study type in which plants were grown in growth chambers."" [GR:pj]",,PECO,Plant Environmental Conditions,https://bioportal.bioontology.org/ontologies/PECO,UO:0000210,colony forming unit,"""A dimensionless count unit which a measure of viable bacterial numbers."" [Wikipedia:Wikipedia]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),672,Branched75,10.21958/phenotype:672,Salt induced changes in Root System Architecture,EZ-Rhizo - length of the Branched Zone at 75 mM NaCl,,0,"1/2 MS medium, 1% agar, pH 5.8 with KOH, plants transferred to media containing 75 mM NaCl 4 days after germination. Root architecture scored 8 days after transfer to treatment media.",2019-05-06T12:47:15.847000Z,0,TO:0000043,root morphology trait,"""A plant axis morphology trait (TO:0000738) which is a quality of a root (PO:0025025)."" [GR:pj, PO:0025025, POC:cooperl]",,PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,EO:0001024,vertical agar growth medium,"""An agar growth medium (EO:0001023) involving use of solid growth media in a vertical orientation."" [PO:cooperl]",,PECO,Plant Environmental Conditions,https://bioportal.bioontology.org/ontologies/PECO,UO:0000001,length unit,"""A unit which is a standard measure of the distance between two points."" [Wikipedia:Wikipedia]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),141,DTF sweden 2008 (2nd experiment),10.21958/phenotype:141,Flowering time in simulated seasons,FT was recorded daily as days to flower after germination in Experiments 1 and 2 with four replicates under each of the four conditions.,,,,2016-07-04T11:16:56.425000Z,0,TO:0000344,days to flowering trait,"""A flowering time trait (TO:0002616)which is the number of days required for an individual flower (PO:0009046), a whole plant (PO:0000003) or a plant population to reach flowering stage (PO:0007616) from a predetermined time point (e.g. the date of seed sowing, seedling transplant, or seedling emergence)."" [GR:pj, TO:cooperl]","Often determinded by either pollen shedding, exsertion of the anthers or simply opening of the flower.",PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,,,,,,,,UO:0000033,day,"""A time unit which is equal to 24 hours."" [Wikipedia:Wikipedia]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),122,Yield spain 2009 (2nd experiment),10.21958/phenotype:122,Flowering time in simulated seasons,Yield was recorded as dry seed weight in grams in Experiment 2 with two replicates under each condition,,,,2016-07-04T11:16:56.339000Z,0,TO:0000181,seed weight,"""A seed morphology trait (TO:0000184) which is the weight of a seed (PO:0009010)."" [GR:pj, ICIS:1058, PO:0009010, TO:moorel]",Seed weight is a component of seed yield (TO:0000905) and seed quality (TO:0000162). Refer to weight (PATO:0000128): A physical quality inhering in a bearer that has mass near a gravitational body.,PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,,,,,,,,UO:0000021,gram,"""A mass unit which is equal to one thousandth of a kilogram or 10^[-3] kg."" [NIST:NIST]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),94,Seed Dormancy,10.21958/phenotype:94,"Atwell et. al, Nature 2010","Number of days of seed dry storage required to reach 50% germination, or DSDS50 value (Alonso-Blanco et al., 2003). The measurement for each genotype was calculated as the average value across all available replicates",,,,2016-06-27T14:14:01.762000Z,0,TO:0000253,seed dormancy,,,PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,EO:0007269,growth chamber study,"""The treatment involving study type in which plants were grown in growth chambers."" [GR:pj]",,PECO,Plant Environmental Conditions,https://bioportal.bioontology.org/ontologies/PECO,UO:0000033,day,"""A time unit which is equal to 24 hours."" [Wikipedia:Wikipedia]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),648,LRL0,10.21958/phenotype:648,Salt induced changes in Root System Architecture,EZ-Rhizo - cummulative lateral root length at 0 mM NaCl,,0,"1/2 MS medium, 1% agar, pH 5.8 with KOH, plants transferred to media containing 0 mM NaCl 4 days after germination. Root architecture scored 4 days after transfer to treatment media.",2019-05-06T12:47:15.837000Z,0,TO:0000043,root morphology trait,"""A plant axis morphology trait (TO:0000738) which is a quality of a root (PO:0025025)."" [GR:pj, PO:0025025, POC:cooperl]",,PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,EO:0001024,vertical agar growth medium,"""An agar growth medium (EO:0001023) involving use of solid growth media in a vertical orientation."" [PO:cooperl]",,PECO,Plant Environmental Conditions,https://bioportal.bioontology.org/ontologies/PECO,UO:0000001,length unit,"""A unit which is a standard measure of the distance between two points."" [Wikipedia:Wikipedia]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),657,PC2sc0,10.21958/phenotype:657,Salt induced changes in Root System Architecture,2nd Principal Component - pulled using all RSA traits with prior scaling at 0 mM NaCl,,0,"1/2 MS medium, 1% agar, pH 5.8 with KOH, plants transferred to media containing 0 mM NaCl 4 days after germination. Root architecture scored 4 days after transfer to treatment media.",2019-05-06T12:47:15.841000Z,0,TO:0000043,root morphology trait,"""A plant axis morphology trait (TO:0000738) which is a quality of a root (PO:0025025)."" [GR:pj, PO:0025025, POC:cooperl]",,PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,EO:0001024,vertical agar growth medium,"""An agar growth medium (EO:0001023) involving use of solid growth media in a vertical orientation."" [PO:cooperl]",,PECO,Plant Environmental Conditions,https://bioportal.bioontology.org/ontologies/PECO,UO:0000186,dimensionless unit,"""A unit which is a standard measure of physical quantity consisting of only a numerical number without any units."" [Wikipedia:Wikipedia]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),49,FT GH,10.21958/phenotype:49,"Atwell et. al, Nature 2010",Flowering time was scored as the number of days between germination date and appearance of the first flower,,,,2016-06-27T14:14:01.524000Z,0,TO:0000344,days to flowering trait,"""A flowering time trait (TO:0002616)which is the number of days required for an individual flower (PO:0009046), a whole plant (PO:0000003) or a plant population to reach flowering stage (PO:0007616) from a predetermined time point (e.g. the date of seed sowing, seedling transplant, or seedling emergence)."" [GR:pj, TO:cooperl]","Often determinded by either pollen shedding, exsertion of the anthers or simply opening of the flower.",PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,EO:0007269,growth chamber study,"""The treatment involving study type in which plants were grown in growth chambers."" [GR:pj]",,PECO,Plant Environmental Conditions,https://bioportal.bioontology.org/ontologies/PECO,UO:0000033,day,"""A time unit which is equal to 24 hours."" [Wikipedia:Wikipedia]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),731,MS-mean Total length day004,10.21958/phenotype:731,Root growth rates under nutrient deficiency,individual root growth was measured as the mean of 3 Arabidopsis seedlings.,,0,"Seedlings were grown on MS plates at 22°C in a growth chamber with long day conditions (16h light, 8h dark)",2019-07-16T09:11:48.625000Z,0,TO:0000227,root length,"""A root morphology trait (TO:0000043) which is the length of one or more roots (PO:0009005)."" [GR:jcl\nGR\:pj, TO:austin_meier\nTO\:cooperl]",refer to PATO:0000122- A 1-D extent quality which is equal to the distance between two points.,PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,EO:0007147,plant growth medium,"""An abiotic plant treatment (EO:0007191) involving the use of a solid or liquid substrate for growing plants or tissue-cultured plant samples."" [GR:pj, PO:cooperl]",,PECO,Plant Environmental Conditions,https://bioportal.bioontology.org/ontologies/PECO,UO:0000241,micron pixel,"""A spatial resolution unit which is equal to a pixel size of one micrometer."" [Wikipedia:Wikipedia]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),671,Basal75,10.21958/phenotype:671,Salt induced changes in Root System Architecture,EZ-Rhizo - length of the Basal Zone at 75 mM NaCl,,0,"1/2 MS medium, 1% agar, pH 5.8 with KOH, plants transferred to media containing 75 mM NaCl 4 days after germination. Root architecture scored 8 days after transfer to treatment media.",2019-05-06T12:47:15.846000Z,0,TO:0000043,root morphology trait,"""A plant axis morphology trait (TO:0000738) which is a quality of a root (PO:0025025)."" [GR:pj, PO:0025025, POC:cooperl]",,PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,EO:0001024,vertical agar growth medium,"""An agar growth medium (EO:0001023) involving use of solid growth media in a vertical orientation."" [PO:cooperl]",,PECO,Plant Environmental Conditions,https://bioportal.bioontology.org/ontologies/PECO,UO:0000001,length unit,"""A unit which is a standard measure of the distance between two points."" [Wikipedia:Wikipedia]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),654,LRLpMRL0,10.21958/phenotype:654,Salt induced changes in Root System Architecture,Ratio of Lateral Root Length (cummulative) and Main Root Length at 0 mM NaCl,,0,"1/2 MS medium, 1% agar, pH 5.8 with KOH, plants transferred to media containing 0 mM NaCl 4 days after germination. Root architecture scored 4 days after transfer to treatment media.",2019-05-06T12:47:15.840000Z,0,TO:0000043,root morphology trait,"""A plant axis morphology trait (TO:0000738) which is a quality of a root (PO:0025025)."" [GR:pj, PO:0025025, POC:cooperl]",,PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,EO:0001024,vertical agar growth medium,"""An agar growth medium (EO:0001023) involving use of solid growth media in a vertical orientation."" [PO:cooperl]",,PECO,Plant Environmental Conditions,https://bioportal.bioontology.org/ontologies/PECO,UO:0000190,ratio,"""A dimensionless unit which denotes an amount or magnitude of one quantity relative to another."" [Wikipedia:Wikipedia]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),675,aLRLpMRL75,10.21958/phenotype:675,Salt induced changes in Root System Architecture,EZ-Rhizo - the average length of lateral root per main root length at 75 mM NaCl,,0,"1/2 MS medium, 1% agar, pH 5.8 with KOH, plants transferred to media containing 75 mM NaCl 4 days after germination. Root architecture scored 8 days after transfer to treatment media.",2019-05-06T12:47:15.848000Z,0,TO:0000043,root morphology trait,"""A plant axis morphology trait (TO:0000738) which is a quality of a root (PO:0025025)."" [GR:pj, PO:0025025, POC:cooperl]",,PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,EO:0001024,vertical agar growth medium,"""An agar growth medium (EO:0001023) involving use of solid growth media in a vertical orientation."" [PO:cooperl]",,PECO,Plant Environmental Conditions,https://bioportal.bioontology.org/ontologies/PECO,UO:0000190,ratio,"""A dimensionless unit which denotes an amount or magnitude of one quantity relative to another."" [Wikipedia:Wikipedia]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),33,Se82,10.21958/phenotype:33,"Atwell et. al, Nature 2010","Selenium concentrations in leaves, grown in soil. Elemental analysis was performed with an ICP-MS (PerkinElmer). Sample normalized to calculated weights as described in Baxter et al., 2008",,,,2016-06-27T14:14:01.448000Z,0,TO:0006055,selenium concentration,"""A mineral and ion content related trait (TO:0000465) which is the concentration of selenium (CHEBI:26628) in some plant structure (PO:0009011)."" [GR:Karthik]",,PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,EO:0007269,growth chamber study,"""The treatment involving study type in which plants were grown in growth chambers."" [GR:pj]",,PECO,Plant Environmental Conditions,https://bioportal.bioontology.org/ontologies/PECO,UO:0000051,concentration unit,"""A unit which represents a standard measurement of how much of a given substance there is mixed with another substance."" [UOC:GVG]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),696,PC1sc125,10.21958/phenotype:696,Salt induced changes in Root System Architecture,1st Principal Component - pulled using all RSA traits with prior scaling at 125 mM NaCl,,0,3rd Principal Component - pulled using all RSA traits with prior scaling at 125 mM NaCl,2019-05-06T12:47:15.857000Z,0,TO:0000043,root morphology trait,"""A plant axis morphology trait (TO:0000738) which is a quality of a root (PO:0025025)."" [GR:pj, PO:0025025, POC:cooperl]",,PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,EO:0001024,vertical agar growth medium,"""An agar growth medium (EO:0001023) involving use of solid growth media in a vertical orientation."" [PO:cooperl]",,PECO,Plant Environmental Conditions,https://bioportal.bioontology.org/ontologies/PECO,UO:0000186,dimensionless unit,"""A unit which is a standard measure of physical quantity consisting of only a numerical number without any units."" [Wikipedia:Wikipedia]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),64,Ni60,10.21958/phenotype:64,"Atwell et. al, Nature 2010","Nickel concentrations in leaves, grown in soil. Elemental analysis was performed with an ICP-MS (PerkinElmer). Sample normalized to calculated weights as described in Baxter et al., 2008",,,,2016-06-27T14:14:01.610000Z,0,TO:0006051,nickel concenteration,"""The total Nickel ion concentration measured in a given volume of a plant or a plant part or plant extract."" [GR:Karthik]",,PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,EO:0007269,growth chamber study,"""The treatment involving study type in which plants were grown in growth chambers."" [GR:pj]",,PECO,Plant Environmental Conditions,https://bioportal.bioontology.org/ontologies/PECO,UO:0000051,concentration unit,"""A unit which represents a standard measurement of how much of a given substance there is mixed with another substance."" [UOC:GVG]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),653,MRLpTRS0,10.21958/phenotype:653,Salt induced changes in Root System Architecture,Ratio between Main Root Length and Total Root Size at 0 mM NaCl,,0,"1/2 MS medium, 1% agar, pH 5.8 with KOH, plants transferred to media containing 0 mM NaCl 4 days after germination. Root architecture scored 4 days after transfer to treatment media.",2019-05-06T12:47:15.839000Z,0,TO:0000043,root morphology trait,"""A plant axis morphology trait (TO:0000738) which is a quality of a root (PO:0025025)."" [GR:pj, PO:0025025, POC:cooperl]",,PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,EO:0001024,vertical agar growth medium,"""An agar growth medium (EO:0001023) involving use of solid growth media in a vertical orientation."" [PO:cooperl]",,PECO,Plant Environmental Conditions,https://bioportal.bioontology.org/ontologies/PECO,UO:0000190,ratio,"""A dimensionless unit which denotes an amount or magnitude of one quantity relative to another."" [Wikipedia:Wikipedia]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),742,PZ-mean Total length day003,10.21958/phenotype:742,Root growth rates under nutrient deficiency,individual root growth was measured as the mean of 3 Arabidopsis seedlings.,,0,"Seedlings were grown on MS plates at 22°C in a growth chamber with long day conditions (16h light, 8h dark)",2019-07-16T09:11:48.631000Z,0,TO:0000227,root length,"""A root morphology trait (TO:0000043) which is the length of one or more roots (PO:0009005)."" [GR:jcl\nGR\:pj, TO:austin_meier\nTO\:cooperl]",refer to PATO:0000122- A 1-D extent quality which is equal to the distance between two points.,PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,EO:0007147,plant growth medium,"""An abiotic plant treatment (EO:0007191) involving the use of a solid or liquid substrate for growing plants or tissue-cultured plant samples."" [GR:pj, PO:cooperl]",,PECO,Plant Environmental Conditions,https://bioportal.bioontology.org/ontologies/PECO,UO:0000241,micron pixel,"""A spatial resolution unit which is equal to a pixel size of one micrometer."" [Wikipedia:Wikipedia]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),55,Chlorosis 10,10.21958/phenotype:55,"Atwell et. al, Nature 2010","Results expressed as binary data, determined by the presence (1) or absence (0) of chlorosis in all 4 plants / accession after 8wks of growth",,,,2016-06-27T14:14:01.552000Z,0,TO:0006060,leaf chlorosis,"""A leaf color trait (TO:0006060) describing the yellowing of leaves, due to insufficient production of chlorophyll."" [GR:Karthik, TO:moorel]",Leaf surface affected by abiotic stresses like insecticides and cold temperature as evidenced by chlorotic tissue.,PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,EO:0007269,growth chamber study,"""The treatment involving study type in which plants were grown in growth chambers."" [GR:pj]",,PECO,Plant Environmental Conditions,https://bioportal.bioontology.org/ontologies/PECO,UO:0000186,dimensionless unit,"""A unit which is a standard measure of physical quantity consisting of only a numerical number without any units."" [Wikipedia:Wikipedia]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),130,DTFplantingSummer2008,10.21958/phenotype:130,Flowering time in simulated seasons,,,,,2016-07-04T11:16:56.376000Z,0,TO:0000344,days to flowering trait,"""A flowering time trait (TO:0002616)which is the number of days required for an individual flower (PO:0009046), a whole plant (PO:0000003) or a plant population to reach flowering stage (PO:0007616) from a predetermined time point (e.g. the date of seed sowing, seedling transplant, or seedling emergence)."" [GR:pj, TO:cooperl]","Often determinded by either pollen shedding, exsertion of the anthers or simply opening of the flower.",PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,,,,,,,,UO:0000186,dimensionless unit,"""A unit which is a standard measure of physical quantity consisting of only a numerical number without any units."" [Wikipedia:Wikipedia]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1
Arabidopsis thaliana (NCBI: 3702),270,B11,10.21958/phenotype:270,Ion Concentration,Boron concentrations in leaves,,,,2017-03-21T12:58:51.178000Z,0,TO:0006043,boron concentration,"""A mineral and ion content related trait (TO:0000465) which is the concentration of boron (CHEBI:22916) in some plant structure (PO:0009011)."" [GR:Karthik]",,PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,EO:0007269,growth chamber study,"""The treatment involving study type in which plants were grown in growth chambers."" [GR:pj]",,PECO,Plant Environmental Conditions,https://bioportal.bioontology.org/ontologies/PECO,UO:0000051,concentration unit,"""A unit which represents a standard measurement of how much of a given substance there is mixed with another substance."" [UOC:GVG]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,6
Arabidopsis thaliana (NCBI: 3702),23,FW ,10.21958/phenotype:23,"Atwell et. al, Nature 2010",Lesioning measured by fresh weight,,,,2016-06-27T14:14:01.082000Z,0,TO:0000652,leaf necrosis,"""A leaf morphology trait (TO:0000748) which is the leaf surface area affected by abiotic stresses like insecticides and cold temperature as evidenced by chlorotic and/or necrotic tissue."" [GR:pj, TO:cooperl]","If you are annotating to this term, please add an additional annotation to vascular leaf morphology (TO:0000419) or non-vascular leaf morphology trait (TO:0000925), depending on the species.",PTO,Plant Trait Ontology,https://bioportal.bioontology.org/ontologies/PTO,EO:0007269,growth chamber study,"""The treatment involving study type in which plants were grown in growth chambers."" [GR:pj]",,PECO,Plant Environmental Conditions,https://bioportal.bioontology.org/ontologies/PECO,UO:0000021,gram,"""A mass unit which is equal to one thousandth of a kilogram or 10^[-3] kg."" [NIST:NIST]",,UO,Units of Measurement,https://bioportal.bioontology.org/ontologies/UO,1