ONTOLOGY SOURCE REFERENCE
Term Source Name	OBI	EFO	UO	NCBITaxon	PO	GMI_accessions
Term Source File	http://data.bioontology.org/ontologies/OBI	http://data.bioontology.org/ontologies/EFO	http://purl.obolibrary.org/obo/UO	http://data.bioontology.org/ontologies/NCBITAXON	http://data.bioontology.org/ontologies/PO	http://gwas.gmi.oeaw.ac.at/#/taxonomy/1/passports?alleleAssayId=0
Term Source Version	23	118		6	10
Term Source Description	Ontology for Biomedical Investigations	Experimental Factor Ontology	Unit Ontology	National Center for Biotechnology Information (NCBI) Organismal Classification	Plant Ontology	Cataloque of Arabidopsis accessions at GMI
INVESTIGATION
Investigation Identifier	study3
Investigation Title	Mejion
Investigation Description	201 different accessions of A. thaliana from different geographic origins. These accessions were part of the RegMap. Seeds were obtained by growing the parental generation of all lines used side by side in the same growth chambers under the same conditions. The seeds were surface sterilized in 2.8% hypochlorite for 4 min and washed three times in MonoQ sterile water. They were then stratified for 72 h at 4 °C in water and darkness and put to grow on our custom Confocal Chamber System (CCs). The seeds were grown for 3 d in vertically oriented CCs containing 1× Murashige and Skoog (MS) salt mixture, 1% (wt/vol) sucrose and 0.8% (wt/vol) agar. To provide a sterile environment for the CCs and prevent them from drying out, we embedded the CCs into conventional agar plates 
Investigation Submission Date	2025-11-03 09:16:50.938607
Investigation Public Release Date	2025-11-03 09:16:50.938618
Comment [Created with configuration]    isaconfig-phenotyping-basic
Comment [Last Opened With Configuration]	isaconfig-phenotyping-basic
INVESTIGATION PUBLICATIONS
Investigation PubMed ID
Investigation Publication DOI
Investigation Publication Author List
Investigation Publication Title
Investigation Publication Status
Investigation Publication Status Term Accession Number
Investigation Publication Status Term Source REF
INVESTIGATION CONTACTS
Investigation Person Last Name
Investigation Person First Name
Investigation Person Mid Initials
Investigation Person Email
Investigation Person Phone
Investigation Person Fax
Investigation Person Address
Investigation Person Affiliation
Investigation Person Roles
Investigation Person Roles Term Accession Number
Investigation Person Roles Term Source REF
STUDY
Study Identifier	study3
Study Title	Mejion
Study Description	
Study Submission Date	2025-11-03 09:16:50.941114
Study Public Release Date	2025-11-03 09:16:50.941116
Study File Name	s_study3.txt
STUDY DESIGN DESCRIPTORS
Study Design Type	201 different accessions of A. thaliana from different geographic origins. These accessions were part of the RegMap. Seeds were obtained by growing the parental generation of all lines used side by side in the same growth chambers under the same conditions. The seeds were surface sterilized in 2.8% hypochlorite for 4 min and washed three times in MonoQ sterile water. They were then stratified for 72 h at 4 °C in water and darkness and put to grow on our custom Confocal Chamber System (CCs). The seeds were grown for 3 d in vertically oriented CCs containing 1× Murashige and Skoog (MS) salt mixture, 1% (wt/vol) sucrose and 0.8% (wt/vol) agar. To provide a sterile environment for the CCs and prevent them from drying out, we embedded the CCs into conventional agar plates 
Study Design Type Term Accession Number	
Study Design Type Term Source REF	
STUDY PUBLICATIONS
Study PubMed ID	24212884
Study Publication DOI	10.1038/ng.2824
Study Publication Author List	Mónica Meijón,Santosh B Satbhai,Takashi Tsuchimatsu& Wolfgang Busch
Study Publication Title	Mónica Meijón,Santosh B Satbhai,Takashi Tsuchimatsu& Wolfgang Busch
Study Publication Status	published
Study Publication Status Term Accession Number	1796
Study Publication Status Term Source REF	EFO
Study FACTORS
Study Factor Name
Study Factor Type
Study Factor Type Term Accession Number
Study Factor Type Term Source REF
STUDY ASSAYS
Study Assay File Name	a_study3.txt
Study Assay Measurement Type	phenotyping
Study Assay Measurement Type Term Accession Number	23
Study Assay Measurement Type Term Source REF	OBI
Study Assay Technology Type
Study Assay Technology Type Term Accession Number
Study Assay Technology Type Term Source REF
Study Assay Technology Platform
STUDY PROTOCOLS
Study Protocol Name	Data transformation
Study Protocol Type	Data transformation
Study Protocol Type Term Accession Number
Study Protocol Type Term Source REF
Study Protocol Description
Study Protocol URI
Study Protocol Version
Study Protocol Parameters Name	Trait Definition File
Study Protocol Parameters Name Term Accession Number
Study Protocol Parameters Name Term Source REF
Study Protocol Components Name
Study Protocol Components Type
Study Protocol Components Type Term Accession Number
Study Protocol Components Type Term Source REF
STUDY CONTACTS
Study Person Last Name
Study Person First Name
Study Person Mid Initials
Study Person Email
Study Person Phone
Study Person Fax
Study Person Address
Study Person Affiliation
Study Person Roles
Study Person Roles Term Accession Number
Study Person Roles Term Source REF
