ONTOLOGY SOURCE REFERENCE
Term Source Name	OBI	EFO	UO	NCBITaxon	PO	GMI_accessions
Term Source File	http://data.bioontology.org/ontologies/OBI	http://data.bioontology.org/ontologies/EFO	http://purl.obolibrary.org/obo/UO	http://data.bioontology.org/ontologies/NCBITAXON	http://data.bioontology.org/ontologies/PO	http://gwas.gmi.oeaw.ac.at/#/taxonomy/1/passports?alleleAssayId=0
Term Source Version	23	118		6	10
Term Source Description	Ontology for Biomedical Investigations	Experimental Factor Ontology	Unit Ontology	National Center for Biotechnology Information (NCBI) Organismal Classification	Plant Ontology	Cataloque of Arabidopsis accessions at GMI
INVESTIGATION
Investigation Identifier	study34
Investigation Title	Lifetime fitness in Germany and Spain under rainfall manipulation
Investigation Description	Data from Exposito-Alonso et al. (2019). A map of climate change-driven natural selection in Arabidopsis thaliana. Nature.

The data is comprised of three fitness traits in eight experimental environments and 98 climate variables of origin.

Fitness traits include Survival from germination to reproductive adult, the number of Seeds produced per individual adult, and the product of both (Fitness). The traits have already been scaled by the mean of the experimental population, so they are relative fitness traits. The codes of each experiment follow a three letter format. The first position is either "m" from Madrid (Spain), "t" from Tuebingen (Germany). The second position is either "h" from high rainfall or "l" from low rainfall. The third position is either "p" from population replicate pot (where plants are at high density), or "i" from an individual replicate pot (where there was one plant per pot). In combination, for example, the code "mlp" refers to the fitness in the experiment of Madrid, at low precipitation, and high plant population density in the plot.

Climate variables were used to understand the relationship between genome variation and environment of origin. They were derived intersecting the geographic coordinates where natural lines were originally collected and climate maps from worldclim.org (and derived metrics).
Investigation Submission Date	2025-10-23 08:02:40.426120
Investigation Public Release Date	2025-10-23 08:02:40.426131
Comment [Created with configuration]    isaconfig-phenotyping-basic
Comment [Last Opened With Configuration]	isaconfig-phenotyping-basic
INVESTIGATION PUBLICATIONS
Investigation PubMed ID
Investigation Publication DOI
Investigation Publication Author List
Investigation Publication Title
Investigation Publication Status
Investigation Publication Status Term Accession Number
Investigation Publication Status Term Source REF
INVESTIGATION CONTACTS
Investigation Person Last Name
Investigation Person First Name
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Investigation Person Roles Term Accession Number
Investigation Person Roles Term Source REF
STUDY
Study Identifier	study34
Study Title	Lifetime fitness in Germany and Spain under rainfall manipulation
Study Description	
Study Submission Date	2025-10-23 08:02:40.428705
Study Public Release Date	2025-10-23 08:02:40.428707
Study File Name	s_study34.txt
STUDY DESIGN DESCRIPTORS
Study Design Type	Data from Exposito-Alonso et al. (2019). A map of climate change-driven natural selection in Arabidopsis thaliana. Nature.

The data is comprised of three fitness traits in eight experimental environments and 98 climate variables of origin.

Fitness traits include Survival from germination to reproductive adult, the number of Seeds produced per individual adult, and the product of both (Fitness). The traits have already been scaled by the mean of the experimental population, so they are relative fitness traits. The codes of each experiment follow a three letter format. The first position is either "m" from Madrid (Spain), "t" from Tuebingen (Germany). The second position is either "h" from high rainfall or "l" from low rainfall. The third position is either "p" from population replicate pot (where plants are at high density), or "i" from an individual replicate pot (where there was one plant per pot). In combination, for example, the code "mlp" refers to the fitness in the experiment of Madrid, at low precipitation, and high plant population density in the plot.

Climate variables were used to understand the relationship between genome variation and environment of origin. They were derived intersecting the geographic coordinates where natural lines were originally collected and climate maps from worldclim.org (and derived metrics).
Study Design Type Term Accession Number	
Study Design Type Term Source REF	
STUDY PUBLICATIONS
Study PubMed ID	
Study Publication DOI	10.1038/s41586-019-1520-9
Study Publication Author List	Moises Exposito-Alonso, 500 Genomes Field Experiment Team, Hernán A. Burbano, Oliver Bossdorf, Rasmus Nielsen, Detlef Weigel
Study Publication Title	Moises Exposito-Alonso, 500 Genomes Field Experiment Team, Hernán A. Burbano, Oliver Bossdorf, Rasmus Nielsen, Detlef Weigel
Study Publication Status	published
Study Publication Status Term Accession Number	1796
Study Publication Status Term Source REF	EFO
Study FACTORS
Study Factor Name
Study Factor Type
Study Factor Type Term Accession Number
Study Factor Type Term Source REF
STUDY ASSAYS
Study Assay File Name	a_study34.txt
Study Assay Measurement Type	phenotyping
Study Assay Measurement Type Term Accession Number	23
Study Assay Measurement Type Term Source REF	OBI
Study Assay Technology Type
Study Assay Technology Type Term Accession Number
Study Assay Technology Type Term Source REF
Study Assay Technology Platform
STUDY PROTOCOLS
Study Protocol Name	Data transformation
Study Protocol Type	Data transformation
Study Protocol Type Term Accession Number
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Study Protocol Description
Study Protocol URI
Study Protocol Version
Study Protocol Parameters Name	Trait Definition File
Study Protocol Parameters Name Term Accession Number
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STUDY CONTACTS
Study Person Last Name
Study Person First Name
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Study Person Fax
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Study Person Roles Term Accession Number
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