| 7521 | Lp2-6 | Czech Republic | Lp2 | Ivo Cetl | 16.81 | 49.38 | CS77052 | Regmap 250k, 1001 Genomes, Full imputed | 795 |
| 7520 | Lp2-2 | Czech Republic | Lp2 | Ivo Cetl | 16.81 | 49.38 | CS76546 | Regmap 250k, 1001 Genomes, Full imputed | 837 |
| 9262 | Lovel-1 | DEN | Lovel | James Beck | 9.48433 | 56.5666 | — | - | 0 |
| 6042 | Lom1-1 | Sweden | Lom1 | Magnus Nordborg | 13.9 | 56.09 | CS77048 | Regmap 250k, 1001 Genomes, Full imputed | 353 |
| 100018 | Lom-3-1 | Norway | Norway | Maarten Koornneef | 8.231 | 61.6813 | — | - | 0 |
| 7428 | Loh-0 | GER | Limburg | Albert Kranz | 8.0666 | 50.3833 | — | - | 0 |
| 100026 | Lod-3-1 | Norway | Norway | Maarten Koornneef | 15.1144 | 68.3047 | — | - | 0 |
| 100022 | Lod-2-2 | Norway | Norway | Maarten Koornneef | 16.3187 | 68.5657 | — | - | 0 |
| 7242 | Lo-2 | GER | Lorrach | Albert Kranz | 7.6666 | 47.6166 | — | Regmap 250k, Full imputed | 74 |
| 7241 | Lo-1 | GER | Lorrach | Albert Kranz | 7.6666 | 47.6166 | — | - | 0 |
| 7217 | Lm-2 | France | Lm | Albert Kranz | 0.5 | 48.0 | CS76545 | 1001 Genomes, Full imputed | 189 |
| 8329 | Lm-2 | France | Lm | Albert Kranz | 0.5 | 48.0 | — | Regmap 250k, Full imputed | 293 |
| 7239 | Ll-2 | Spain | Ll | Albert Kranz | 2.49 | 41.59 | — | Regmap 250k, Full imputed | 25 |
| 7238 | Ll-1 | Spain | Ll | Albert Kranz | 2.49 | 41.59 | — | Regmap 250k, Full imputed | 25 |
| 7237 | Ll-0 | Spain | Ll | Albert Kranz | 2.49 | 41.59 | — | - | 0 |
| 7236 | Litva | Lithuania | Litva | Igor Vizir | — | — | CS76543 | 1001 Genomes, Full imputed | 46 |
| 8430 | Lisse | NED | Lisse | Paul Williams | 4.5667 | 52.25 | — | Regmap 250k, Full imputed | 186 |
| 8327 | Lis-5 | Sweden | Lis | Magnus Nordborg | 14.7 | 56.0 | — | - | 0 |
| 6041 | Lis-3 | Sweden | Lis | Magnus Nordborg | 14.775 | 56.0328 | CS77044 | Regmap 250k, 1001 Genomes, Full imputed | 505 |
| 8222 | Lis-2 | Sweden | Lis | Magnus Nordborg | 14.775 | 56.0328 | CS77043 | Regmap 250k, 1001 Genomes, Full imputed | 621 |