AraPheno - Links

Useful Links to Imporant Resources and Websites

The AraGWAS Catalog
The AraGWAS Catalog is a public and manually curated database for standardised GWAS results for Arabidopsis thaliana
1001 Genomes
A Catalog of Arabidopsis thaliana Genetic Variation
easyGWAS
easyGWAS is a web-application for performing, analysing, visualising and comparing genome-wide association studies for any kind of model organism
GWA-Portal
GWA-Portal is a web-application for performing, analysing and visualising and comparing genome-wide association studies for Arabidopsis thaliana
AraCLIM
AraCLIM, provides an intuitive tool to define the environment at the site of origin of each of the 1,131 geo-referenced accessions sequenced as part of the 1,001 Genomes Project

Phenotypic and genome-wide association with the local environment of Arabidopsis
Ferrero-Serrano, Ángel, and Sarah M. Assmann.
Nature ecology & evolution 3 (2019): 274-285. (Link)
AraPort
Araport is a one-stop-shop for Arabidopsis thaliana genomics. Araport offers gene and protein reports with orthology, expression, interactions and the latest annotation, plus analysis tools, community apps, and web services..
TAIR
The Arabidopsis Information Resource (TAIR) maintains a database of genetic and molecular biology data for the model higher plant Arabidopsis thaliana
EnsemblPlants
The Ensembl genome annotation system, developed jointly by the EBI and the Wellcome Trust Sanger Institute, has been used for the annotation, analysis and display of vertebrate genomes since 2000. Since 2009, the Ensembl site has been complemented by the creation of five new sites, for bacteria, protists, fungi, plants and invertebrate metazoa, enabling users to use a single collection of (interactive and programatic) interfaces for accessing and comparing genome-scale data from species of scientific interest from across the taxonomy