| 7214 | Ler-2 | GER | Ler | Maarten Koornneef | 10.8719 | 47.984 | — | - | 0 |
| 6932 | Ler-1 | GER | Ler | Eric Holub | 10.8719 | 47.984 | CS77021 | Regmap 250k, 1001 Genomes, Full imputed | 893 |
| 7213 | Ler-0 | GER | Ler | Maarten Koornneef | 10.8719 | 47.984 | CS77020 | 1001 Genomes, Full imputed | 17 |
| 9945 | Leo-1 | Spain | — | — | -3.11 | 41.8 | CS76413 | 1001 Genomes, Full imputed | 21 |
| 5754 | Leg-1 | UK | Legburthwaite | Eric Holub | -3.0 | 54.6 | — | - | 0 |
| 9987 | Lecho-1 | BUL | — | — | 23.5 | 41.43 | CS76371 | 1001 Genomes, Full imputed | 21 |
| 9633 | Lebja-4 | Russia | — | 0 | 80.83 | 51.63 | CS77017 | 1001 Genomes, Full imputed | 9 |
| 9632 | Lebja-2 | Russia | — | 0 | 80.82 | 51.67 | CS77016 | 1001 Genomes, Full imputed | 138 |
| 9631 | Lebja-1 | Russia | — | 0 | 80.79 | 51.65 | CS77015 | 1001 Genomes, Full imputed | 133 |
| 9954 | Leb-3 | Russia | — | — | 80.82 | 51.65 | — | - | 13 |
| 754 | Leb-1 | Russia | Lebjasche | Heike Schmuths | 80.7833 | 51.6333 | — | - | 0 |
| 7218 | Le-0 | NED | Le | Albert Kranz | 4.49015 | 52.1611 | CS76540 | 1001 Genomes, Full imputed | 137 |
| 8323 | Lc-0 | UK | Lc | Albert Kranz | -4.0 | 57.0 | — | Regmap 250k, Full imputed | 249 |
| 7216 | Laud-1 | UK | Laud | Maarten Koornneef | -2.75 | 55.7 | — | - | 0 |
| 5752 | Lan-1 | UK | Lanark | D. Ratcliffe | -3.8 | 55.7 | — | Regmap 250k, Full imputed | 84 |
| 7208 | Lan-0 | UK | Lan | Albert Kranz | -3.78181 | 55.6739 | CS76539 | 1001 Genomes, Full imputed | 160 |
| 9421 | Lan 1 | Sweden | Landön | Alison Anastasio | 14.3997 | 55.9745 | CS77009 | Regmap 250k, 1001 Genomes, Full imputed | 631 |
| 1816 | Lak-9 | US | Lak | Diane Byers | -86.67 | 41.8 | — | - | 0 |
| 1815 | Lak-8 | US | Lak | Diane Byers | -86.67 | 41.8 | — | - | 0 |
| 1814 | Lak-7 | US | Lak | Diane Byers | -86.67 | 41.8 | — | - | 0 |
