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DOI
Description
GWAS of 107 phenotypes in Arabidopsis thaliana inbred lines using ~250k SNPs in 199 accessions
Publications
  • Genome-wide association study of 107 phenotypes in Arabidopsis thaliana inbred lines

    Atwell S, Huang YS, Vilhjálmsson BJ, Willems G, Horton M, Li Y, Meng D, Platt A, Tarone AM, Hu TT, Jiang R, Muliyati NW, Zhang X, Amer MA, Baxter I, Brachi B, Chory J, Dean C, Debieu M, de Meaux J, Ecker JR, Faure N, Kniskern JM, Jones JD, Michael T, Nemri A, Roux F, Salt DE, Tang C, Todesco M, Traw MB, Weigel D, Marjoram P, Borevitz JO, Bergelson J, Nordborg M

    Nature. 2010 465(7298): 627-31. doi: 10.1038/nature08800


Phenotype NameTrait Ontology (TO)Environmental Ontoloy (EO)Unit Ontology (UO)# values
Anthocyanin 16anthocyanin contentgrowth chamber studydimensionless unit176
Anthocyanin 10anthocyanin contentgrowth chamber studydimensionless unit177
At1 CFU2bacterial disease resistancegrowth chamber studycolony forming unit175
Ni60nickel concenterationgrowth chamber studyconcentration unit93
P31phosphorus concentrationgrowth chamber studyconcentration unit93
Emwa1protist disease resistancegrowth chamber studydimensionless unit85
As75arsenic concentrationgrowth chamber studyconcentration unit93
Germ in darkgerminability in darkgrowth chamber studypercent93
FRIflowering time traitgrowth chamber studyratio164
As CFU2bacterial disease resistancegrowth chamber studycolony forming unit175
Trichome avg Cleaf trichome densitygrowth chamber studycount unit94
Vern Growthrelative growth rategrowth chamber studypercent110
Mo98molybdenum concentrationgrowth chamber studyconcentration unit93
Hiks1protist disease resistancegrowth chamber studydimensionless unit84
Anthocyanin 22anthocyanin contentgrowth chamber studydimensionless unit177
Zn66zinc concentrationgrowth chamber studyconcentration unit93
Trichome avg JAleaf trichome densitygrowth chamber studycount unit94
LESleaf necrosisgrowth chamber studydimensionless unit95
Silique 16fruit lengthgrowth chamber studycentimeter95
Emoy*protist disease resistancegrowth chamber studydimensionless unit76