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DOI
Description
GWAS of 107 phenotypes in Arabidopsis thaliana inbred lines using ~250k SNPs in 199 accessions
Publications
  • Genome-wide association study of 107 phenotypes in Arabidopsis thaliana inbred lines

    Atwell S, Huang YS, Vilhjálmsson BJ, Willems G, Horton M, Li Y, Meng D, Platt A, Tarone AM, Hu TT, Jiang R, Muliyati NW, Zhang X, Amer MA, Baxter I, Brachi B, Chory J, Dean C, Debieu M, de Meaux J, Ecker JR, Faure N, Kniskern JM, Jones JD, Michael T, Nemri A, Roux F, Salt DE, Tang C, Todesco M, Traw MB, Weigel D, Marjoram P, Borevitz JO, Bergelson J, Nordborg M

    Nature. 2010 465(7298): 627-31. doi: 10.1038/nature08800


Phenotype NameTrait Ontology (TO)Environmental Ontoloy (EO)Unit Ontology (UO)# values
RP GHreproductive growth timegrowth chamber studyday147
Rosette Erect 22rolled leafgrowth chamber studydimensionless unit176
S34sulfur concentrationgrowth chamber studyconcentration unit93
SDdays to flowering traitgrowth chamber studyday162
SDVdays to flowering traitgrowth chamber studyday159
Se82selenium concentrationgrowth chamber studyconcentration unit93
Secondary Dormancygermination ratiogrowth chamber studypercent93
Seed Dormancyseed dormancygrowth chamber studyday83
Seed bank 133-91seed dormancygrowth chamber studydimensionless unit110
Seedling Growthrelative growth rategrowth chamber studyratio100
Silique 16fruit lengthgrowth chamber studycentimeter95
Silique 22fruit lengthgrowth chamber studycentimeter95
Storage 28 daysseed dormancygrowth chamber studypercent110
Storage 56 daysseed dormancygrowth chamber studypercent110
Storage 7 daysseed dormancygrowth chamber studypercent110
Trichome avg Cleaf trichome densitygrowth chamber studycount unit94
Trichome avg JAleaf trichome densitygrowth chamber studycount unit94
Vern Growthrelative growth rategrowth chamber studypercent110
Width 10plant widthgrowth chamber studycentimeter176
Width 16plant widthgrowth chamber studycentimeter175