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DOI
Description
GWAS of 107 phenotypes in Arabidopsis thaliana inbred lines using ~250k SNPs in 199 accessions
Publications
  • Genome-wide association study of 107 phenotypes in Arabidopsis thaliana inbred lines

    Atwell S, Huang YS, Vilhjálmsson BJ, Willems G, Horton M, Li Y, Meng D, Platt A, Tarone AM, Hu TT, Jiang R, Muliyati NW, Zhang X, Amer MA, Baxter I, Brachi B, Chory J, Dean C, Debieu M, de Meaux J, Ecker JR, Faure N, Kniskern JM, Jones JD, Michael T, Nemri A, Roux F, Salt DE, Tang C, Todesco M, Traw MB, Weigel D, Marjoram P, Borevitz JO, Bergelson J, Nordborg M

    Nature. 2010 465(7298): 627-31. doi: 10.1038/nature08800


Phenotype NameTrait Ontology (TO)Environmental Ontoloy (EO)Unit Ontology (UO)# values
RP GHreproductive growth timegrowth chamber studyday
Rosette Erect 22rolled leafgrowth chamber studydimensionless unit
S34sulfur concentrationgrowth chamber studyconcentration unit
SDdays to flowering traitgrowth chamber studyday
SDVdays to flowering traitgrowth chamber studyday
Se82selenium concentrationgrowth chamber studyconcentration unit
Secondary Dormancygermination ratiogrowth chamber studypercent
Seed Dormancyseed dormancygrowth chamber studyday
Seed bank 133-91seed dormancygrowth chamber studydimensionless unit
Seedling Growthrelative growth rategrowth chamber studyratio
Silique 16fruit lengthgrowth chamber studycentimeter
Silique 22fruit lengthgrowth chamber studycentimeter
Storage 28 daysseed dormancygrowth chamber studypercent
Storage 56 daysseed dormancygrowth chamber studypercent
Storage 7 daysseed dormancygrowth chamber studypercent
Trichome avg Cleaf trichome densitygrowth chamber studycount unit
Trichome avg JAleaf trichome densitygrowth chamber studycount unit
Vern Growthrelative growth rategrowth chamber studypercent
Width 10plant widthgrowth chamber studycentimeter
Width 16plant widthgrowth chamber studycentimeter