| 5772 | Set-1 | UK | Settle | D. Ratcliffe | -2.3 | 54.1 | CS78787 | Regmap 250k, 1001 Genomes, Full imputed | 144 |
| 7333 | Sei-0 | Italy | Sei | Albert Kranz | 11.5614 | 46.5438 | CS76599 | Regmap 250k, 1001 Genomes, Full imputed | 323 |
| 7332 | Seattle-0 | US | Seattle | Rick Amasino | -122.2 | 47.0 | CS76598 | 1001 Genomes, Full imputed | 25 |
| 8245 | Seattle-0 | US | Seattle | Rick Amasino | -122.2 | 47.0 | — | Regmap 250k, Full imputed | 104 |
| 6961 | Se-0 | Spain | Se | Albert Kranz | -3.53333 | 38.3333 | CS76597 | Regmap 250k, 1001 Genomes, Full imputed | 511 |
| 5771 | Sco-1 | UK | Scotney Castle | Eric Holub | 0.4 | 51.1 | — | - | 0 |
| 9807 | Schl-7 | GER | Schlaitdorf | 0 | 9.22 | 48.6 | CS77240 | 1001 Genomes, Full imputed | 140 |
| 9721 | Schip-1 | BUL | — | 0 | 25.33 | 42.72 | CS77239 | 1001 Genomes, Full imputed | 33 |
| 7340 | Sav-0 | Czech Republic | Slavice | Albert Kranz | 15.8833 | 49.1833 | — | Regmap 250k, Full imputed | 132 |
| 8412 | Sav-0 | Czech Republic | Slavice | Albert Kranz | 15.8833 | 49.1833 | — | Regmap 250k, Full imputed | 114 |
| 9660 | Sarno-1 | Italy | — | 0 | 14.57 | 40.84 | CS77236 | 1001 Genomes, Full imputed | 134 |
| 7330 | Sapporo-0 | Japan | Sapporo | Yoshie Hanzawa | 141.346 | 43.0553 | — | Regmap 250k, Full imputed | 212 |
| 8378 | Sap-0 | Czech Republic | Sap | Albert Kranz | 14.24 | 49.49 | — | Regmap 250k, Full imputed | 257 |
| 7329 | Santa Clara | US | Santa Clara | Angus Murphy | -121.16 | 37.21 | — | - | 4 |
| 8376 | Sanna-2 | Sweden | San | Magnus Nordborg | 18.0 | 62.69 | CS77234 | Regmap 250k, 1001 Genomes, Full imputed | 344 |
| 6081 | San-9 | Sweden | San | Magnus Nordborg | 18.0 | 62.69 | — | - | 0 |
| 6080 | San-8 | Sweden | San | Magnus Nordborg | 18.0 | 62.69 | — | - | 0 |
| 6079 | San-5 | Sweden | San | Magnus Nordborg | 18.0 | 62.69 | — | - | 0 |
| 6078 | San-3 | Sweden | San | Magnus Nordborg | 18.0 | 62.69 | — | - | 0 |
| 8247 | San-2 | Sweden | Sandåkra | Magnus Nordborg | 13.74 | 56.07 | CS77233 | Regmap 250k, 1001 Genomes, Full imputed | 720 |