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DOI
Description
GWAS of 107 phenotypes in Arabidopsis thaliana inbred lines using ~250k SNPs in 199 accessions
Publications
  • Genome-wide association study of 107 phenotypes in Arabidopsis thaliana inbred lines

    Atwell S, Huang YS, Vilhjálmsson BJ, Willems G, Horton M, Li Y, Meng D, Platt A, Tarone AM, Hu TT, Jiang R, Muliyati NW, Zhang X, Amer MA, Baxter I, Brachi B, Chory J, Dean C, Debieu M, de Meaux J, Ecker JR, Faure N, Kniskern JM, Jones JD, Michael T, Nemri A, Roux F, Salt DE, Tang C, Todesco M, Traw MB, Weigel D, Marjoram P, Borevitz JO, Bergelson J, Nordborg M

    Nature. 2010 465(7298): 627-31. doi: 10.1038/nature08800


Phenotype NameTrait Ontology (TO)Environmental Ontoloy (EO)Unit Ontology (UO)# values
avrRpt2bacterial disease resistancegrowth chamber studydimensionless unit89
avrRpm1bacterial disease resistancegrowth chamber studydimensionless unit84
avrPphBbacterial disease resistancegrowth chamber studydimensionless unit90
avrBbacterial disease resistancegrowth chamber studydimensionless unit87
Zn66zinc concentrationgrowth chamber studyconcentration unit93
YEL leaf chlorosisgrowth chamber studydimensionless unit95
Width 22plant widthgrowth chamber studycentimeter175
Width 16plant widthgrowth chamber studycentimeter175
Width 10plant widthgrowth chamber studycentimeter176
Vern Growthrelative growth rategrowth chamber studypercent110
Trichome avg JAleaf trichome densitygrowth chamber studycount unit94
Trichome avg Cleaf trichome densitygrowth chamber studycount unit94
Storage 7 daysseed dormancygrowth chamber studypercent110
Storage 56 daysseed dormancygrowth chamber studypercent110
Storage 28 daysseed dormancygrowth chamber studypercent110
Silique 22fruit lengthgrowth chamber studycentimeter95
Silique 16fruit lengthgrowth chamber studycentimeter95
Seedling Growthrelative growth rategrowth chamber studyratio100
Seed bank 133-91seed dormancygrowth chamber studydimensionless unit110
Seed Dormancyseed dormancygrowth chamber studyday83