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DOI
Description
GWAS of 107 phenotypes in Arabidopsis thaliana inbred lines using ~250k SNPs in 199 accessions
Publications
  • Genome-wide association study of 107 phenotypes in Arabidopsis thaliana inbred lines

    Atwell S, Huang YS, Vilhjálmsson BJ, Willems G, Horton M, Li Y, Meng D, Platt A, Tarone AM, Hu TT, Jiang R, Muliyati NW, Zhang X, Amer MA, Baxter I, Brachi B, Chory J, Dean C, Debieu M, de Meaux J, Ecker JR, Faure N, Kniskern JM, Jones JD, Michael T, Nemri A, Roux F, Salt DE, Tang C, Todesco M, Traw MB, Weigel D, Marjoram P, Borevitz JO, Bergelson J, Nordborg M

    Nature. 2010 465(7298): 627-31. doi: 10.1038/nature08800


Phenotype NameTrait Ontology (TO)Environmental Ontoloy (EO)Unit Ontology (UO)# values
LN22leaf numbergrowth chamber studycount unit176
Bs CFU2bacterial disease resistancegrowth chamber studycolony forming unit175
avrRpt2bacterial disease resistancegrowth chamber studydimensionless unit89
Hypocotyl lengthseedling hypocotyl lengthgrowth chamber studycentimeter89
Germ 22days to germinategrowth chamber studyday177
Leaf roll 22rolled leafgrowth chamber studydimensionless unit176
SDdays to flowering traitgrowth chamber studyday162
8Wdays to flowering traitgrowth chamber studyday155
FT GHdays to flowering traitgrowth chamber studyday166
DSDS50DSDS50growth chamber studyday109
Ca43calcium concentrationgrowth chamber studyconcentration unit93
LC Duration GHreproductive growth timegrowth chamber studyday147
0W GH FTdays to flowering traitgrowth chamber studyday153
B11boron concentrationgrowth chamber studyconcentration unit93
Chlorosis 10leaf chlorosisgrowth chamber studydimensionless unit177
RP GHreproductive growth timegrowth chamber studyday147
Chlorosis 16leaf chlorosisgrowth chamber studydimensionless unit176
LFS GHreproductive growth timegrowth chamber studyday148
Germ 10days to germinategrowth chamber studyday177
Germ 16days to germinategrowth chamber studyday176