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DOI
Description
GWAS of 107 phenotypes in Arabidopsis thaliana inbred lines using ~250k SNPs in 199 accessions
Publications
  • Genome-wide association study of 107 phenotypes in Arabidopsis thaliana inbred lines

    Atwell S, Huang YS, Vilhjálmsson BJ, Willems G, Horton M, Li Y, Meng D, Platt A, Tarone AM, Hu TT, Jiang R, Muliyati NW, Zhang X, Amer MA, Baxter I, Brachi B, Chory J, Dean C, Debieu M, de Meaux J, Ecker JR, Faure N, Kniskern JM, Jones JD, Michael T, Nemri A, Roux F, Salt DE, Tang C, Todesco M, Traw MB, Weigel D, Marjoram P, Borevitz JO, Bergelson J, Nordborg M

    Nature. 2010 465(7298): 627-31. doi: 10.1038/nature08800


Phenotype NameTrait Ontology (TO)Environmental Ontoloy (EO)Unit Ontology (UO)# values
Zn66zinc concentrationgrowth chamber studyconcentration unit
S34sulfur concentrationgrowth chamber studyconcentration unit
Na23sodium concentrationgrowth chamber studyconcentration unit
Se82selenium concentrationgrowth chamber studyconcentration unit
Hypocotyl lengthseedling hypocotyl lengthgrowth chamber studycentimeter
Seed bank 133-91seed dormancygrowth chamber studydimensionless unit
Storage 28 daysseed dormancygrowth chamber studypercent
Storage 7 daysseed dormancygrowth chamber studypercent
Seed Dormancyseed dormancygrowth chamber studyday
Storage 56 daysseed dormancygrowth chamber studypercent
Rosette Erect 22rolled leafgrowth chamber studydimensionless unit
Leaf roll 16rolled leafgrowth chamber studydimensionless unit
Leaf roll 22rolled leafgrowth chamber studydimensionless unit
LC Duration GHreproductive growth timegrowth chamber studyday
MT GHreproductive growth timegrowth chamber studyday
RP GHreproductive growth timegrowth chamber studyday
FT Duration GHreproductive growth timegrowth chamber studyday
LFS GHreproductive growth timegrowth chamber studyday
Seedling Growthrelative growth rategrowth chamber studyratio
After Vern Growthrelative growth rategrowth chamber studyratio