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DOI
Description
GWAS of 107 phenotypes in Arabidopsis thaliana inbred lines using ~250k SNPs in 199 accessions
Publications
  • Genome-wide association study of 107 phenotypes in Arabidopsis thaliana inbred lines

    Atwell S, Huang YS, Vilhjálmsson BJ, Willems G, Horton M, Li Y, Meng D, Platt A, Tarone AM, Hu TT, Jiang R, Muliyati NW, Zhang X, Amer MA, Baxter I, Brachi B, Chory J, Dean C, Debieu M, de Meaux J, Ecker JR, Faure N, Kniskern JM, Jones JD, Michael T, Nemri A, Roux F, Salt DE, Tang C, Todesco M, Traw MB, Weigel D, Marjoram P, Borevitz JO, Bergelson J, Nordborg M

    Nature. 2010 465(7298): 627-31. doi: 10.1038/nature08800


Phenotype NameTrait Ontology (TO)Environmental Ontoloy (EO)Unit Ontology (UO)# values
LN22leaf numbergrowth chamber studycount unit
Bs CFU2bacterial disease resistancegrowth chamber studycolony forming unit
avrRpt2bacterial disease resistancegrowth chamber studydimensionless unit
Hypocotyl lengthseedling hypocotyl lengthgrowth chamber studycentimeter
Germ 22days to germinategrowth chamber studyday
Leaf roll 22rolled leafgrowth chamber studydimensionless unit
SDdays to flowering traitgrowth chamber studyday
8Wdays to flowering traitgrowth chamber studyday
FT GHdays to flowering traitgrowth chamber studyday
DSDS50DSDS50growth chamber studyday
Ca43calcium concentrationgrowth chamber studyconcentration unit
LC Duration GHreproductive growth timegrowth chamber studyday
0W GH FTdays to flowering traitgrowth chamber studyday
B11boron concentrationgrowth chamber studyconcentration unit
Chlorosis 10leaf chlorosisgrowth chamber studydimensionless unit
RP GHreproductive growth timegrowth chamber studyday
Chlorosis 16leaf chlorosisgrowth chamber studydimensionless unit
LFS GHreproductive growth timegrowth chamber studyday
Germ 10days to germinategrowth chamber studyday
Germ 16days to germinategrowth chamber studyday