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DOI
Description
GWAS of 107 phenotypes in Arabidopsis thaliana inbred lines using ~250k SNPs in 199 accessions
Publications
  • Genome-wide association study of 107 phenotypes in Arabidopsis thaliana inbred lines

    Atwell S, Huang YS, Vilhjálmsson BJ, Willems G, Horton M, Li Y, Meng D, Platt A, Tarone AM, Hu TT, Jiang R, Muliyati NW, Zhang X, Amer MA, Baxter I, Brachi B, Chory J, Dean C, Debieu M, de Meaux J, Ecker JR, Faure N, Kniskern JM, Jones JD, Michael T, Nemri A, Roux F, Salt DE, Tang C, Todesco M, Traw MB, Weigel D, Marjoram P, Borevitz JO, Bergelson J, Nordborg M

    Nature. 2010 465(7298): 627-31. doi: 10.1038/nature08800


Phenotype NameTrait Ontology (TO)Environmental Ontoloy (EO)Unit Ontology (UO)# values
Width 16plant widthgrowth chamber studycentimeter175
As2 CFU2bacterial disease resistancegrowth chamber studycolony forming unit175
Width 22plant widthgrowth chamber studycentimeter175
LN22leaf numbergrowth chamber studycount unit176
Leaf roll 16rolled leafgrowth chamber studydimensionless unit176
Leaf roll 22rolled leafgrowth chamber studydimensionless unit176
Leaf serr 16leaf margin serratedgrowth chamber studydimensionless unit176
Leaf serr 22leaf margin serratedgrowth chamber studydimensionless unit176
Anthocyanin 16anthocyanin contentgrowth chamber studydimensionless unit176
Germ 16days to germinategrowth chamber studyday176
LN16leaf numbergrowth chamber studycount unit176
Chlorosis 16leaf chlorosisgrowth chamber studydimensionless unit176
Rosette Erect 22rolled leafgrowth chamber studydimensionless unit176
Width 10plant widthgrowth chamber studycentimeter176
Chlorosis 22leaf chlorosisgrowth chamber studydimensionless unit176
Germ 22days to germinategrowth chamber studyday177
LN10leaf numbergrowth chamber studycount unit177
Anthocyanin 10anthocyanin contentgrowth chamber studydimensionless unit177
Germ 10days to germinategrowth chamber studyday177
Chlorosis 10leaf chlorosisgrowth chamber studydimensionless unit177