Unsplashed background img 1

DOI
Description
GWAS of 107 phenotypes in Arabidopsis thaliana inbred lines using ~250k SNPs in 199 accessions
Publications
  • Genome-wide association study of 107 phenotypes in Arabidopsis thaliana inbred lines

    Atwell S, Huang YS, Vilhjálmsson BJ, Willems G, Horton M, Li Y, Meng D, Platt A, Tarone AM, Hu TT, Jiang R, Muliyati NW, Zhang X, Amer MA, Baxter I, Brachi B, Chory J, Dean C, Debieu M, de Meaux J, Ecker JR, Faure N, Kniskern JM, Jones JD, Michael T, Nemri A, Roux F, Salt DE, Tang C, Todesco M, Traw MB, Weigel D, Marjoram P, Borevitz JO, Bergelson J, Nordborg M

    Nature. 2010 465(7298): 627-31. doi: 10.1038/nature08800


Phenotype NameTrait Ontology (TO)Environmental Ontoloy (EO)Unit Ontology (UO)# values
After Vern Growthrelative growth rategrowth chamber studyratio110
Storage 56 daysseed dormancygrowth chamber studypercent110
Vern Growthrelative growth rategrowth chamber studypercent110
DSDS50DSDS50growth chamber studyday109
Seedling Growthrelative growth rategrowth chamber studyratio100
LESleaf necrosisgrowth chamber studydimensionless unit95
YEL leaf chlorosisgrowth chamber studydimensionless unit95
Bacterial titerbacterial disease resistancegrowth chamber studycolony forming unit95
FW leaf necrosisgrowth chamber studygram95
LY leaf necrosisgrowth chamber studydimensionless unit95
DW leaf necrosisgrowth chamber studygram95
Silique 22fruit lengthgrowth chamber studycentimeter95
Silique 16fruit lengthgrowth chamber studycentimeter95
Trichome avg Cleaf trichome densitygrowth chamber studycount unit94
Aphid numberaphid resistancegrowth chamber studycount unit94
Trichome avg JAleaf trichome densitygrowth chamber studycount unit94
K39potassium concentrationgrowth chamber studyconcentration unit93
Na23sodium concentrationgrowth chamber studyconcentration unit93
Cd114cadmium concentrationgrowth chamber studyconcentration unit93
Co59cobalt concentrationgrowth chamber studyconcentration unit93