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DOI
Description
GWAS of 107 phenotypes in Arabidopsis thaliana inbred lines using ~250k SNPs in 199 accessions
Publications
  • Genome-wide association study of 107 phenotypes in Arabidopsis thaliana inbred lines

    Atwell S, Huang YS, Vilhjálmsson BJ, Willems G, Horton M, Li Y, Meng D, Platt A, Tarone AM, Hu TT, Jiang R, Muliyati NW, Zhang X, Amer MA, Baxter I, Brachi B, Chory J, Dean C, Debieu M, de Meaux J, Ecker JR, Faure N, Kniskern JM, Jones JD, Michael T, Nemri A, Roux F, Salt DE, Tang C, Todesco M, Traw MB, Weigel D, Marjoram P, Borevitz JO, Bergelson J, Nordborg M

    Nature. 2010 465(7298): 627-31. doi: 10.1038/nature08800


Phenotype NameTrait Ontology (TO)Environmental Ontoloy (EO)Unit Ontology (UO)# values
SDdays to flowering traitgrowth chamber studyday
Germ 22days to germinategrowth chamber studyday
Germ 16days to germinategrowth chamber studyday
Germ 10days to germinategrowth chamber studyday
FRIflowering time traitgrowth chamber studyratio
FLCflowering time traitgrowth chamber studyratio
Silique 22fruit lengthgrowth chamber studycentimeter
Silique 16fruit lengthgrowth chamber studycentimeter
Germ in darkgerminability in darkgrowth chamber studypercent
Secondary Dormancygermination ratiogrowth chamber studypercent
Fe56iron concentrationgrowth chamber studyconcentration unit
Chlorosis 16leaf chlorosisgrowth chamber studydimensionless unit
Chlorosis 22leaf chlorosisgrowth chamber studydimensionless unit
YEL leaf chlorosisgrowth chamber studydimensionless unit
Chlorosis 10leaf chlorosisgrowth chamber studydimensionless unit
Leaf roll 10leaf margin serratedgrowth chamber studydimensionless unit
Leaf serr 22leaf margin serratedgrowth chamber studydimensionless unit
Leaf serr 16leaf margin serratedgrowth chamber studydimensionless unit
Leaf serr 10leaf margin serratedgrowth chamber studydimensionless unit
LY leaf necrosisgrowth chamber studydimensionless unit