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DOI
Description
GWAS of 107 phenotypes in Arabidopsis thaliana inbred lines using ~250k SNPs in 199 accessions
Publications
  • Genome-wide association study of 107 phenotypes in Arabidopsis thaliana inbred lines

    Atwell S, Huang YS, Vilhjálmsson BJ, Willems G, Horton M, Li Y, Meng D, Platt A, Tarone AM, Hu TT, Jiang R, Muliyati NW, Zhang X, Amer MA, Baxter I, Brachi B, Chory J, Dean C, Debieu M, de Meaux J, Ecker JR, Faure N, Kniskern JM, Jones JD, Michael T, Nemri A, Roux F, Salt DE, Tang C, Todesco M, Traw MB, Weigel D, Marjoram P, Borevitz JO, Bergelson J, Nordborg M

    Nature. 2010 465(7298): 627-31. doi: 10.1038/nature08800


Phenotype NameTrait Ontology (TO)Environmental Ontoloy (EO)Unit Ontology (UO)# values
Seed Dormancyseed dormancygrowth chamber studyday83
8W GH FTdays to flowering traitgrowth chamber studyday162
4Wdays to flowering traitgrowth chamber studyday119
FT22days to flowering traitgrowth chamber studyday193
SDVdays to flowering traitgrowth chamber studyday159
Bsbacterial disease resistancegrowth chamber studycount unit175
8W GH LNleaf numbergrowth chamber studycount unit163
Aphid numberaphid resistancegrowth chamber studycount unit94
LN22leaf numbergrowth chamber studycount unit176
Trichome avg Cleaf trichome densitygrowth chamber studycount unit94
Trichome avg JAleaf trichome densitygrowth chamber studycount unit94
0W GH LNleaf numbergrowth chamber studycount unit135
LN10leaf numbergrowth chamber studycount unit177
LN16leaf numbergrowth chamber studycount unit176
Na23sodium concentrationgrowth chamber studyconcentration unit93
Cd114cadmium concentrationgrowth chamber studyconcentration unit93
Co59cobalt concentrationgrowth chamber studyconcentration unit93
Cu65copper concentrationgrowth chamber studyconcentration unit93
Se82selenium concentrationgrowth chamber studyconcentration unit93
Ca43calcium concentrationgrowth chamber studyconcentration unit93