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DOI
Description
GWAS of 107 phenotypes in Arabidopsis thaliana inbred lines using ~250k SNPs in 199 accessions
Publications
  • Genome-wide association study of 107 phenotypes in Arabidopsis thaliana inbred lines

    Atwell S, Huang YS, Vilhjálmsson BJ, Willems G, Horton M, Li Y, Meng D, Platt A, Tarone AM, Hu TT, Jiang R, Muliyati NW, Zhang X, Amer MA, Baxter I, Brachi B, Chory J, Dean C, Debieu M, de Meaux J, Ecker JR, Faure N, Kniskern JM, Jones JD, Michael T, Nemri A, Roux F, Salt DE, Tang C, Todesco M, Traw MB, Weigel D, Marjoram P, Borevitz JO, Bergelson J, Nordborg M

    Nature. 2010 465(7298): 627-31. doi: 10.1038/nature08800


Phenotype NameTrait Ontology (TO)Environmental Ontoloy (EO)Unit Ontology (UO)# values
FT Diameter Fieldleaf numbergrowth chamber studylength unit180
FT Duration GHreproductive growth timegrowth chamber studyday147
FT Fielddays to flowering traitgrowth chamber studyday180
FT GHdays to flowering traitgrowth chamber studyday166
FT10days to flowering traitgrowth chamber studyday194
FT16days to flowering traitgrowth chamber studyday193
FT22days to flowering traitgrowth chamber studyday193
FW leaf necrosisgrowth chamber studygram95
Fe56iron concentrationgrowth chamber studyconcentration unit93
Germ 10days to germinategrowth chamber studyday177
Germ 16days to germinategrowth chamber studyday176
Germ 22days to germinategrowth chamber studyday177
Germ in darkgerminability in darkgrowth chamber studypercent93
Hiks1protist disease resistancegrowth chamber studydimensionless unit84
Hypocotyl lengthseedling hypocotyl lengthgrowth chamber studycentimeter89
K39potassium concentrationgrowth chamber studyconcentration unit93
LC Duration GHreproductive growth timegrowth chamber studyday147
LDdays to flowering traitgrowth chamber studyday167
LDVdays to flowering traitgrowth chamber studyday168
LESleaf necrosisgrowth chamber studydimensionless unit95