Study: Genetic dissection of shoot regeneration from root explants in Arabidopsis (Lardon et al., 2020)
DOI
Description
In the frame of a genome-wide association study, we have subjected 170 natural Arabidopsis thaliana accessions to two protocol variants for shoot regeneration from root explants and recorded substantial variation in regenerated shoot numbers and several related in vitro traits. The results of this study are reported in "The genetic framework of shoot regeneration in Arabidopsis comprises master regulators and conditional fine-tuning factors" (Lardon et al., Commun. Biol., 2020).
Publications
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The genetic framework of shoot regeneration in Arabidopsis comprises master regulators and conditional fine-tuning factors
Communications Biology. 2020 3: None. doi: https://doi.org/10.1038/s42003-020-01274-9
| Phenotype Name | Trait Ontology (TO) | Environmental Ontoloy (EO) | Unit Ontology (UO) | # values |
|---|---|---|---|---|
| shoots 15d protocol a | in vitro plant structure morphology trait | in vitro solid growth medium | count unit | 1713 |
| shoot primordia 15d protocol a | in vitro plant structure morphology trait | in vitro solid growth medium | count unit | 1713 |
| undefined structures 15d protocol a | in vitro plant structure morphology trait | in vitro solid growth medium | count unit | 1713 |
| root-like structures 15d protocol a | in vitro plant structure morphology trait | in vitro solid growth medium | count unit | 1713 |
| callus score 15d protocol a | in vitro plant structure morphology trait | in vitro solid growth medium | dimensionless unit | 1713 |
| area 15d protocol a | in vitro plant structure morphology trait | in vitro solid growth medium | area unit | 1703 |
| greening 15d protocol a | in vitro plant structure morphology trait | in vitro solid growth medium | dimensionless unit | 1703 |
| shoots 15d protocol b | in vitro plant structure morphology trait | in vitro solid growth medium | count unit | 2164 |
| shoot primordia 15d protocol b | in vitro plant structure morphology trait | in vitro solid growth medium | count unit | 2164 |
| undefined structures 15d protocol b | in vitro plant structure morphology trait | in vitro solid growth medium | count unit | 2164 |
| root-like structures 15d protocol b | in vitro plant structure morphology trait | in vitro solid growth medium | count unit | 2164 |
| callus score 15d protocol b | in vitro plant structure morphology trait | in vitro solid growth medium | dimensionless unit | 2164 |
| area 15d protocol b | in vitro plant structure morphology trait | in vitro solid growth medium | area unit | 2132 |
| greening 15d protocol b | in vitro plant structure morphology trait | in vitro solid growth medium | dimensionless unit | 2132 |
| shoots 21d protocol a | in vitro plant structure morphology trait | in vitro solid growth medium | count unit | 1711 |
| shoot primordia 21d protocol a | in vitro plant structure morphology trait | in vitro solid growth medium | count unit | 1711 |
| undefined structures 21d protocol a | in vitro plant structure morphology trait | in vitro solid growth medium | count unit | 1711 |
| root-like structures 21d protocol a | in vitro plant structure morphology trait | in vitro solid growth medium | count unit | 1711 |
| callus score 21d protocol a | in vitro plant structure morphology trait | in vitro solid growth medium | dimensionless unit | 1711 |
| area 21d protocol a | in vitro plant structure morphology trait | in vitro solid growth medium | area unit | 1688 |