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DOI
Description
GWAS of 107 phenotypes in Arabidopsis thaliana inbred lines using ~250k SNPs in 199 accessions
Publications
  • Genome-wide association study of 107 phenotypes in Arabidopsis thaliana inbred lines

    Atwell S, Huang YS, Vilhjálmsson BJ, Willems G, Horton M, Li Y, Meng D, Platt A, Tarone AM, Hu TT, Jiang R, Muliyati NW, Zhang X, Amer MA, Baxter I, Brachi B, Chory J, Dean C, Debieu M, de Meaux J, Ecker JR, Faure N, Kniskern JM, Jones JD, Michael T, Nemri A, Roux F, Salt DE, Tang C, Todesco M, Traw MB, Weigel D, Marjoram P, Borevitz JO, Bergelson J, Nordborg M

    Nature. 2010 465(7298): 627-31. doi: 10.1038/nature08800


Phenotype NameTrait Ontology (TO)Environmental Ontoloy (EO)Unit Ontology (UO)# values
Leaf roll 16rolled leafgrowth chamber studydimensionless unit176
Leaf roll 10leaf margin serratedgrowth chamber studydimensionless unit177
LY leaf necrosisgrowth chamber studydimensionless unit95
LN22leaf numbergrowth chamber studycount unit176
LN16leaf numbergrowth chamber studycount unit176
LN10leaf numbergrowth chamber studycount unit177
LFS GHreproductive growth timegrowth chamber studyday148
LESleaf necrosisgrowth chamber studydimensionless unit95
LDVdays to flowering traitgrowth chamber studyday168
LDdays to flowering traitgrowth chamber studyday167
LC Duration GHreproductive growth timegrowth chamber studyday147
K39potassium concentrationgrowth chamber studyconcentration unit93
Hypocotyl lengthseedling hypocotyl lengthgrowth chamber studycentimeter89
Hiks1protist disease resistancegrowth chamber studydimensionless unit84
Germ in darkgerminability in darkgrowth chamber studypercent93
Germ 22days to germinategrowth chamber studyday177
Germ 16days to germinategrowth chamber studyday176
Germ 10days to germinategrowth chamber studyday177
Fe56iron concentrationgrowth chamber studyconcentration unit93
FW leaf necrosisgrowth chamber studygram95