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DOI
Description
GWAS of 107 phenotypes in Arabidopsis thaliana inbred lines using ~250k SNPs in 199 accessions
Publications
  • Genome-wide association study of 107 phenotypes in Arabidopsis thaliana inbred lines

    Atwell S, Huang YS, Vilhjálmsson BJ, Willems G, Horton M, Li Y, Meng D, Platt A, Tarone AM, Hu TT, Jiang R, Muliyati NW, Zhang X, Amer MA, Baxter I, Brachi B, Chory J, Dean C, Debieu M, de Meaux J, Ecker JR, Faure N, Kniskern JM, Jones JD, Michael T, Nemri A, Roux F, Salt DE, Tang C, Todesco M, Traw MB, Weigel D, Marjoram P, Borevitz JO, Bergelson J, Nordborg M

    Nature. 2010 465(7298): 627-31. doi: 10.1038/nature08800


Phenotype NameTrait Ontology (TO)Environmental Ontoloy (EO)Unit Ontology (UO)# values
As2 CFU2bacterial disease resistancegrowth chamber studycolony forming unit175
Co59cobalt concentrationgrowth chamber studyconcentration unit93
FW leaf necrosisgrowth chamber studygram95
Cu65copper concentrationgrowth chamber studyconcentration unit93
Bacterial titerbacterial disease resistancegrowth chamber studycolony forming unit95
Width 22plant widthgrowth chamber studycentimeter175
Storage 56 daysseed dormancygrowth chamber studypercent110
YEL leaf chlorosisgrowth chamber studydimensionless unit95
FLCflowering time traitgrowth chamber studyratio167
FT16days to flowering traitgrowth chamber studyday193
FT10days to flowering traitgrowth chamber studyday194
FT Duration GHreproductive growth timegrowth chamber studyday147
Se82selenium concentrationgrowth chamber studyconcentration unit93
LDVdays to flowering traitgrowth chamber studyday168
Noco2protist disease resistancegrowth chamber studydimensionless unit87
8W GH LNleaf numbergrowth chamber studycount unit163
0Wdays to flowering traitgrowth chamber studyday137
MT GHreproductive growth timegrowth chamber studyday147
After Vern Growthrelative growth rategrowth chamber studyratio110
Aphid numberaphid resistancegrowth chamber studycount unit94