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DOI
Description
GWAS of 107 phenotypes in Arabidopsis thaliana inbred lines using ~250k SNPs in 199 accessions
Publications
  • Genome-wide association study of 107 phenotypes in Arabidopsis thaliana inbred lines

    Atwell S, Huang YS, Vilhjálmsson BJ, Willems G, Horton M, Li Y, Meng D, Platt A, Tarone AM, Hu TT, Jiang R, Muliyati NW, Zhang X, Amer MA, Baxter I, Brachi B, Chory J, Dean C, Debieu M, de Meaux J, Ecker JR, Faure N, Kniskern JM, Jones JD, Michael T, Nemri A, Roux F, Salt DE, Tang C, Todesco M, Traw MB, Weigel D, Marjoram P, Borevitz JO, Bergelson J, Nordborg M

    Nature. 2010 465(7298): 627-31. doi: 10.1038/nature08800


Phenotype NameTrait Ontology (TO)Environmental Ontoloy (EO)Unit Ontology (UO)# values
K39potassium concentrationgrowth chamber studyconcentration unit93
0W GH LNleaf numbergrowth chamber studycount unit135
At2bacterial disease resistancegrowth chamber studycolony forming unit175
At1bacterial disease resistancegrowth chamber studycolony forming unit175
LN10leaf numbergrowth chamber studycount unit177
FT Fielddays to flowering traitgrowth chamber studyday180
LN16leaf numbergrowth chamber studycount unit176
avrBbacterial disease resistancegrowth chamber studydimensionless unit87
LDdays to flowering traitgrowth chamber studyday167
Seedling Growthrelative growth rategrowth chamber studyratio100
S34sulfur concentrationgrowth chamber studyconcentration unit93
Leaf serr 22leaf margin serratedgrowth chamber studydimensionless unit176
DW leaf necrosisgrowth chamber studygram95
Seed Dormancyseed dormancygrowth chamber studyday83
Mn55manganese concentrationgrowth chamber studyconcentration unit93
Silique 22fruit lengthgrowth chamber studycentimeter95
avrPphBbacterial disease resistancegrowth chamber studydimensionless unit90
Fe56iron concentrationgrowth chamber studyconcentration unit93
8W GH FTdays to flowering traitgrowth chamber studyday162
4Wdays to flowering traitgrowth chamber studyday119