Study: Atwell et. al, Nature 2010
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GWAS of 107 phenotypes in Arabidopsis thaliana inbred lines using ~250k SNPs in 199 accessions
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  • Genome-wide association study of 107 phenotypes in Arabidopsis thaliana inbred lines

    Atwell S, Huang YS, Vilhjálmsson BJ, Willems G, Horton M, Li Y, Meng D, Platt A, Tarone AM, Hu TT, Jiang R, Muliyati NW, Zhang X, Amer MA, Baxter I, Brachi B, Chory J, Dean C, Debieu M, de Meaux J, Ecker JR, Faure N, Kniskern JM, Jones JD, Michael T, Nemri A, Roux F, Salt DE, Tang C, Todesco M, Traw MB, Weigel D, Marjoram P, Borevitz JO, Bergelson J, Nordborg M

    Nature. 2010 465(7298): 627-31. doi: 10.1038/nature08800


Phenotype NameTrait Ontology (TO)Environmental Ontoloy (EO)Unit Ontology (UO)
avrRpt2bacterial disease resistancegrowth chamber studydimensionless unit
avrRpm1bacterial disease resistancegrowth chamber studydimensionless unit
avrPphBbacterial disease resistancegrowth chamber studydimensionless unit
avrBbacterial disease resistancegrowth chamber studydimensionless unit
Zn66zinc concentrationgrowth chamber studyconcentration unit
YEL leaf chlorosisgrowth chamber studydimensionless unit
Width 22plant widthgrowth chamber studycentimeter
Width 16plant widthgrowth chamber studycentimeter
Width 10plant widthgrowth chamber studycentimeter
Vern Growthrelative growth rategrowth chamber studypercent
Trichome avg JAleaf trichome densitygrowth chamber studycount unit
Trichome avg Cleaf trichome densitygrowth chamber studycount unit
Storage 7 daysseed dormancygrowth chamber studypercent
Storage 56 daysseed dormancygrowth chamber studypercent
Storage 28 daysseed dormancygrowth chamber studypercent
Silique 22fruit lengthgrowth chamber studycentimeter
Silique 16fruit lengthgrowth chamber studycentimeter
Seedling Growthrelative growth rategrowth chamber studyratio
Seed bank 133-91seed dormancygrowth chamber studydimensionless unit
Seed Dormancyseed dormancygrowth chamber studyday